Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
- nucleus 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021911.1-P | Field mustard | nucleus | 78.29 | 78.81 |
| KRH42324 | Soybean | plastid | 55.26 | 56.76 |
| KRH58452 | Soybean | nucleus, plastid | 55.26 | 56.0 |
| GSMUA_Achr4P15000_001 | Banana | nucleus | 42.11 | 55.65 |
| GSMUA_Achr4P07950_001 | Banana | nucleus | 44.74 | 52.31 |
| Os01t0666200-01 | Rice | nucleus | 42.11 | 48.12 |
| HORVU3Hr1G060620.1 | Barley | nucleus | 38.16 | 44.27 |
| TraesCS3D01G242800.1 | Wheat | nucleus | 37.5 | 44.19 |
| TraesCS3A01G242800.1 | Wheat | nucleus | 36.84 | 43.41 |
| Zm00001d043946_P001 | Maize | nucleus, plastid | 39.47 | 43.17 |
| KRH58451 | Soybean | extracellular | 34.21 | 36.88 |
| OQU87294 | Sorghum | plastid | 43.42 | 34.92 |
| Zm00001d011528_P001 | Maize | mitochondrion, plastid | 24.34 | 33.33 |
| AT4G35570.1 | Thale cress | nucleus | 26.32 | 32.0 |
| AT1G20693.1 | Thale cress | nucleus, plastid | 28.29 | 29.86 |
| AT2G17560.1 | Thale cress | nucleus | 25.0 | 27.54 |
| AT1G20696.2 | Thale cress | nucleus, plastid | 25.66 | 26.53 |
| TraesCS3B01G270900.1 | Wheat | nucleus | 38.16 | 24.17 |
| AT3G51880.2 | Thale cress | nucleus | 26.32 | 21.62 |
| AT5G23420.1 | Thale cress | nucleus, plastid | 25.66 | 16.18 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | EntrezGene:818008 | ProteinID:AEC08976.1 | ArrayExpress:AT2G34450 | EnsemblPlantsGene:AT2G34450 |
| RefSeq:AT2G34450 | TAIR:AT2G34450 | RefSeq:AT2G34450-TAIR-G | EnsemblPlants:AT2G34450.2 | TAIR:AT2G34450.2 | Unigene:At.37803 |
| InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 | InterPro:IPR036910 | RefSeq:NP_001031480.1 | PFAM:PF00505 |
| PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 |
| PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF200 | SMART:SM00398 | SUPFAM:SSF47095 | UniParc:UPI00005DC028 |
| SEG:seg | : | : | : | : | : |
Description
HMG-box (high mobility group) DNA-binding family protein [Source:TAIR;Acc:AT2G34450]
Coordinates
chr2:-:14527736..14529492
Molecular Weight (calculated)
17598.9 Da
IEP (calculated)
10.150
GRAVY (calculated)
-1.209
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MTKRAPKSGP LSPSCSGGSS RNLELAVKSS EGARRSTRLR LQPLRKPKTS PKKKPVKLQT KMPKKPATAF FFFLDDFRKQ YQEENPDVKS MREVIGKTCG
101: EKWKTMTYEE KVKYYDIATE KREEFHRAMT EYTKRMESGA HDESETDSDY SE
101: EKWKTMTYEE KVKYYDIATE KREEFHRAMT EYTKRMESGA HDESETDSDY SE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.