Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d011528_P001 | Maize | mitochondrion, plastid | 56.12 | 70.27 |
| Os01t0666200-01 | Rice | nucleus | 63.31 | 66.17 |
| TraesCS3D01G242800.1 | Wheat | nucleus | 58.99 | 63.57 |
| HORVU3Hr1G060620.1 | Barley | nucleus | 59.71 | 63.36 |
| TraesCS3A01G242800.1 | Wheat | nucleus | 58.27 | 62.79 |
| GSMUA_Achr4P15000_001 | Banana | nucleus | 49.64 | 60.0 |
| OQU87294 | Sorghum | plastid | 76.98 | 56.61 |
| GSMUA_Achr4P07950_001 | Banana | nucleus | 48.92 | 52.31 |
| Bra021911.1-P | Field mustard | nucleus | 45.32 | 41.72 |
| KRH42324 | Soybean | plastid | 43.17 | 40.54 |
| AT2G34450.2 | Thale cress | nucleus, plastid | 43.17 | 39.47 |
| KRH58452 | Soybean | nucleus, plastid | 42.45 | 39.33 |
| TraesCS3B01G270900.1 | Wheat | nucleus | 58.99 | 34.17 |
| KRH58451 | Soybean | extracellular | 28.06 | 27.66 |
| Zm00001d021433_P002 | Maize | nucleus | 30.22 | 27.63 |
| Zm00001d036355_P001 | Maize | nucleus | 15.83 | 24.44 |
| Zm00001d002659_P001 | Maize | nucleus | 20.86 | 23.58 |
| Zm00001d014858_P001 | Maize | extracellular, mitochondrion | 26.62 | 23.57 |
| Zm00001d006306_P006 | Maize | vacuole | 28.06 | 22.29 |
| Zm00001d006298_P001 | Maize | cytosol | 18.7 | 19.4 |
| Zm00001d017555_P001 | Maize | nucleus | 23.02 | 18.39 |
| Zm00001d051427_P002 | Maize | nucleus | 23.74 | 18.33 |
| Zm00001d052749_P001 | Maize | nucleus | 25.18 | 16.51 |
| Zm00001d031233_P001 | Maize | vacuole | 15.83 | 9.82 |
Protein Annotations
| Gene3D:1.10.30.10 | EntrezGene:100285256 | MapMan:35.1 | UniProt:A0A1D6NGD6 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 | InterPro:IPR036910 | ProteinID:ONM39496.1 |
| PFAM:PF00505 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF200 | SMART:SM00398 | SUPFAM:SSF47095 |
| UniParc:UPI0008446443 | EnsemblPlantsGene:Zm00001d043946 | EnsemblPlants:Zm00001d043946_P001 | EnsemblPlants:Zm00001d043946_T001 | SEG:seg | : |
Description
HMG-transcription factor 4HMG1/2-like protein
Coordinates
chr3:-:214388200..214392378
Molecular Weight (calculated)
16093.7 Da
IEP (calculated)
10.521
GRAVY (calculated)
-0.901
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTRSQTSPK PLKTVAMAPR PSSTKRKPRP KPAGKGDPRA PKKPPTAFFY FMEDFRKIYK QEKPSVKSMQ EIGKACGEKW NTMTFEVSIF SLQPDSRVPL
101: VIYHLMLPAD EKVKYYDIAT EKRAEFEKAM IEYNKKKES
101: VIYHLMLPAD EKVKYYDIAT EKRAEFEKAM IEYNKKKES
001: MTKRAPKSGP LSPSCSGGSS RNLELAVKSS EGARRSTRLR LQPLRKPKTS PKKKPVKLQT KMPKKPATAF FFFLDDFRKQ YQEENPDVKS MREIGKTCGE
101: KWKTMTYEEK VKYYDIATEK REEFHRAMTE YTKRMESGAH DESETDSDYS E
101: KWKTMTYEEK VKYYDIATEK REEFHRAMTE YTKRMESGAH DESETDSDYS E
Arabidopsis Description
HMG-box (high mobility group) DNA-binding family protein [Source:TAIR;Acc:AT2G34450]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.