Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- extracellular 3
- endoplasmic reticulum 3
- vacuole 4
- plasma membrane 3
- golgi 3
- nucleus 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0551600-01 | Rice | nucleus | 59.43 | 81.89 |
| Zm00001d006298_P001 | Maize | cytosol | 61.71 | 80.6 |
| TraesCS5D01G359600.1 | Wheat | nucleus | 53.71 | 75.81 |
| TraesCS5B01G354800.1 | Wheat | nucleus | 53.14 | 75.0 |
| Zm00001d021433_P002 | Maize | nucleus | 65.14 | 75.0 |
| OQU89887 | Sorghum | nucleus | 58.29 | 68.46 |
| GSMUA_Achr10P... | Banana | nucleus | 49.71 | 56.49 |
| GSMUA_Achr2P03630_001 | Banana | nucleus | 49.71 | 56.49 |
| Solyc02g082700.2.1 | Tomato | nucleus | 45.14 | 56.43 |
| PGSC0003DMT400003983 | Potato | extracellular, nucleus | 45.14 | 56.03 |
| GSMUA_Achr11P... | Banana | nucleus | 48.57 | 55.92 |
| GSMUA_Achr9P21200_001 | Banana | nucleus | 48.57 | 55.19 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.0 | 54.61 |
| TraesCS5A01G352100.2 | Wheat | nucleus | 53.71 | 54.34 |
| VIT_04s0044g00110.t01 | Wine grape | nucleus | 46.86 | 53.25 |
| VIT_18s0122g01190.t01 | Wine grape | nucleus | 46.29 | 52.94 |
| CDY29512 | Canola | nucleus, plastid | 40.0 | 51.09 |
| Bra025838.1-P | Field mustard | nucleus, plastid | 40.0 | 51.09 |
| CDX96626 | Canola | nucleus, plastid | 41.14 | 49.66 |
| KRH51597 | Soybean | nucleus | 44.0 | 49.04 |
| CDY65900 | Canola | nucleus, plastid | 40.0 | 48.61 |
| AT1G20693.1 | Thale cress | nucleus, plastid | 40.0 | 48.61 |
| CDY33643 | Canola | nucleus, plastid | 40.0 | 48.28 |
| CDY01357 | Canola | nucleus, plastid | 38.86 | 48.23 |
| Zm00001d014858_P001 | Maize | extracellular, mitochondrion | 42.29 | 47.13 |
| Solyc03g032130.2.1 | Tomato | nucleus | 30.29 | 46.9 |
| Zm00001d036355_P001 | Maize | nucleus | 22.86 | 44.44 |
| AT1G20696.2 | Thale cress | nucleus, plastid | 37.14 | 44.22 |
| CDY31871 | Canola | plastid | 40.57 | 43.56 |
| KRH60915 | Soybean | nucleus | 44.57 | 43.09 |
| PGSC0003DMT400048091 | Potato | nucleus | 38.86 | 42.5 |
| HORVU5Hr1G087340.1 | Barley | mitochondrion | 53.14 | 38.43 |
| Bra012244.1-P | Field mustard | nucleus, plastid | 21.71 | 38.38 |
| Zm00001d002659_P001 | Maize | nucleus | 23.43 | 33.33 |
| Zm00001d043946_P001 | Maize | nucleus, plastid | 22.29 | 28.06 |
| Zm00001d017555_P001 | Maize | nucleus | 25.14 | 25.29 |
| Zm00001d011528_P001 | Maize | mitochondrion, plastid | 16.0 | 25.23 |
| Zm00001d051427_P002 | Maize | nucleus | 25.14 | 24.44 |
| PGSC0003DMT400043013 | Potato | nucleus | 30.86 | 23.18 |
| Zm00001d052749_P001 | Maize | nucleus | 24.0 | 19.81 |
| Zm00001d031233_P001 | Maize | vacuole | 18.29 | 14.29 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | UniProt:A0A1D6EUM9 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 | InterPro:IPR036910 | ProteinID:ONM23356.1 | PFAM:PF00505 |
| PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF284 | SMART:SM00398 | SUPFAM:SSF47095 | UniParc:UPI0008443948 |
| EnsemblPlantsGene:Zm00001d006306 | EnsemblPlants:Zm00001d006306_P006 | EnsemblPlants:Zm00001d006306_T006 | : | : | : |
Description
HMG-transcription factor 3High mobility group B protein 2
Coordinates
chr2:+:204114404..204115852
Molecular Weight (calculated)
19100.9 Da
IEP (calculated)
9.391
GRAVY (calculated)
-0.527
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLVWVVADG FIGFGSVGLE MKSRARSGGG DSRLSVRKTK VEKDPNKPKR PPTAFFVFME EFRKDYKEKH PNVKQVSVIG KAGGDMWKSL SDAEKAPYVS
101: KAEKLKVEYT KKMDAYNNKQ SGGGPTLSGD SDKSKSEVND GDEEVKANPP VPCPDSCFPL LVLLCGSQTL LVPSI
101: KAEKLKVEYT KKMDAYNNKQ SGGGPTLSGD SDKSKSEVND GDEEVKANPP VPCPDSCFPL LVLLCGSQTL LVPSI
001: MKTAKGKDKV KTTKEALKPV DDRKVGKRKA PAEKPTKRET RKEKKAKKDP NKPKRAPSAF FVFLEDFRVT FKKENPNVKA VSAVGKAGGQ KWKSMSQAEK
101: APYEEKAAKR KAEYEKQMDA YNKNLEEGSD ESEKSRSEIN DEDEASGEVT IPLSNEELLE KEAAGDDEEE EEEEDDDDDD DEEED
101: APYEEKAAKR KAEYEKQMDA YNKNLEEGSD ESEKSRSEIN DEDEASGEVT IPLSNEELLE KEAAGDDEEE EEEEDDDDDD DEEED
Arabidopsis Description
HMGB1high mobility group B1 [Source:TAIR;Acc:AT3G51880]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.