Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 1
- mitochondrion 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96626 | Canola | nucleus, plastid | 97.93 | 97.93 |
| CDY01357 | Canola | nucleus, plastid | 87.59 | 90.07 |
| CDY65900 | Canola | nucleus, plastid | 88.28 | 88.89 |
| AT1G20693.1 | Thale cress | nucleus, plastid | 87.59 | 88.19 |
| CDY29512 | Canola | nucleus, plastid | 82.76 | 87.59 |
| CDY31871 | Canola | plastid | 84.14 | 74.85 |
| VIT_18s0122g01190.t01 | Wine grape | nucleus | 70.34 | 66.67 |
| Solyc02g082700.2.1 | Tomato | nucleus | 64.14 | 66.43 |
| PGSC0003DMT400003983 | Potato | extracellular, nucleus | 64.14 | 65.96 |
| VIT_04s0044g00110.t01 | Wine grape | nucleus | 67.59 | 63.64 |
| KRH51597 | Soybean | nucleus | 67.59 | 62.42 |
| Solyc03g032130.2.1 | Tomato | nucleus | 47.59 | 61.06 |
| AT1G20696.2 | Thale cress | nucleus, plastid | 61.38 | 60.54 |
| TraesCS5D01G359600.1 | Wheat | nucleus | 50.34 | 58.87 |
| GSMUA_Achr2P03630_001 | Banana | nucleus | 62.07 | 58.44 |
| TraesCS5B01G354800.1 | Wheat | nucleus | 49.66 | 58.06 |
| GSMUA_Achr9P21200_001 | Banana | nucleus | 60.69 | 57.14 |
| KRH60915 | Soybean | nucleus | 71.03 | 56.91 |
| Zm00001d014858_P001 | Maize | extracellular, mitochondrion | 61.38 | 56.69 |
| GSMUA_Achr11P... | Banana | nucleus | 59.31 | 56.58 |
| GSMUA_Achr10P... | Banana | nucleus | 60.0 | 56.49 |
| Os06t0728000-02 | Rice | nucleus | 60.69 | 56.05 |
| TraesCSU01G099700.3 | Wheat | nucleus | 61.38 | 55.28 |
| TraesCS7D01G538400.2 | Wheat | nucleus | 61.38 | 55.28 |
| TraesCS7A01G552400.1 | Wheat | nucleus | 61.38 | 55.28 |
| Os09t0551600-01 | Rice | nucleus | 48.28 | 55.12 |
| CDX75512 | Canola | nucleus | 53.1 | 54.61 |
| CDX69149 | Canola | nucleus | 52.41 | 53.9 |
| GSMUA_AchrUn_... | Banana | nucleus | 51.72 | 53.19 |
| CDY24349 | Canola | nucleus | 49.66 | 52.55 |
| CDY64458 | Canola | nucleus | 48.97 | 51.82 |
| CDY26814 | Canola | nucleus | 45.52 | 50.77 |
| PGSC0003DMT400048091 | Potato | nucleus | 55.17 | 50.0 |
| CDY30359 | Canola | nucleus | 46.9 | 50.0 |
| CDX78045 | Canola | nucleus | 59.31 | 48.86 |
| CDX90629 | Canola | nucleus | 55.86 | 47.09 |
| CDY29051 | Canola | nucleus | 56.55 | 46.86 |
| Zm00001d021433_P002 | Maize | nucleus | 48.97 | 46.71 |
| Zm00001d036355_P001 | Maize | nucleus | 27.59 | 44.44 |
| OQU89887 | Sorghum | nucleus | 43.45 | 42.28 |
| TraesCS5A01G352100.2 | Wheat | nucleus | 50.34 | 42.2 |
| Zm00001d006306_P006 | Maize | vacuole | 48.28 | 40.0 |
| HORVU7Hr1G121390.1 | Barley | nucleus, plastid | 60.0 | 39.01 |
| Zm00001d006298_P001 | Maize | cytosol | 35.86 | 38.81 |
| CDX72548 | Canola | plastid | 52.41 | 36.89 |
| CDY40620 | Canola | nucleus, plastid | 52.41 | 36.89 |
| HORVU5Hr1G087340.1 | Barley | mitochondrion | 49.66 | 29.75 |
| KXG20955 | Sorghum | cytosol, extracellular, nucleus | 55.17 | 28.78 |
| PGSC0003DMT400043013 | Potato | nucleus | 42.76 | 26.61 |
| CDX80362 | Canola | nucleus | 28.97 | 25.93 |
| CDY64875 | Canola | nucleus | 41.38 | 25.0 |
| CDY46957 | Canola | nucleus | 41.38 | 24.69 |
| CDY16851 | Canola | nucleus | 40.0 | 24.17 |
| CDY40795 | Canola | nucleus | 41.38 | 24.1 |
| CDX88025 | Canola | nucleus | 27.59 | 21.74 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | UniProt:A0A078H9X7 | EnsemblPlants:CDY33643 | ProteinID:CDY33643 | ProteinID:CDY33643.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00054994001 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf |
| InterPro:IPR009071 | InterPro:IPR036910 | PFAM:PF00505 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF222 |
| SMART:SM00398 | SUPFAM:SSF47095 | UniParc:UPI0004EB68D1 | SEG:seg | : | : |
Description
BnaC08g19430DBnaC08g19430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H9X7]
Coordinates
chrLK032319:+:165995..167638
Molecular Weight (calculated)
16025.3 Da
IEP (calculated)
6.088
GRAVY (calculated)
-1.398
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGGKSKTET RSSKLSVAKK PAKAAGRSKA AAKDPNKPKR PASAFFVFME DFRQTYKKEH PSNKSVAAVG KAGGEKWKSL SDSEKAPFVA KADKRKVEYE
101: KTMKAYNKKL EEGPKEDEEE SDKSVSEVND EDDADDGSDE EEDDD
101: KTMKAYNKKL EEGPKEDEEE SDKSVSEVND EDDADDGSDE EEDDD
001: MKGAKSKTET RSSKLSVTKK PAKGAGRGKA AAKDPNKPKR PASAFFVFME DFRETFKKEN PKNKSVATVG KAAGDKWKSL SDSEKAPYVA KAEKRKVEYE
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEED DD
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEED DD
Arabidopsis Description
HMGB2High mobility group B protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O49596]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.