CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72548	Canola	plastid	96.12	96.12
Bra017723.1-P	Field mustard	nucleus, plastid	96.12	93.4
CDX75512	Canola	nucleus	63.11	92.2
CDX69149	Canola	nucleus	62.14	90.78
CDY64458	Canola	nucleus	47.57	71.53
CDY24349	Canola	nucleus	47.09	70.8
CDY26814	Canola	nucleus	43.69	69.23
CDY30359	Canola	nucleus	44.17	66.91
AT4G35570.1	Thale cress	nucleus	39.32	64.8
CDY65900	Canola	nucleus, plastid	36.89	52.78
CDX96626	Canola	nucleus, plastid	36.89	52.41
CDY33643	Canola	nucleus, plastid	36.89	52.41
CDY01357	Canola	nucleus, plastid	35.44	51.77
KRH39434	Soybean	nucleus	34.95	50.7
CDY29512	Canola	nucleus, plastid	33.5	50.37
Os02t0670400-01	Rice	nucleus	34.95	49.66
KRH07880	Soybean	nucleus	33.5	49.64
TraesCS6A01G253900.1	Wheat	nucleus	33.5	49.64
TraesCS6D01G235400.1	Wheat	nucleus	33.01	48.92
TraesCS6B01G271600.1	Wheat	nucleus	33.01	48.92
OQU85655	Sorghum	nucleus	31.55	48.87
CDY31871	Canola	plastid	33.5	42.33
CDX78045	Canola	nucleus	34.47	40.34
CDX90629	Canola	nucleus	33.01	39.53
CDY29051	Canola	nucleus	33.5	39.43
HORVU2Hr1G095890.3	Barley	nucleus, plastid	24.27	39.06
KXG26906	Sorghum	nucleus	21.84	37.82
TraesCS2D01G401100.1	Wheat	nucleus	21.84	37.19
Os04t0564600-01	Rice	nucleus	23.79	37.12
Zm00001d002659_P001	Maize	nucleus	21.84	36.59
TraesCS2A01G404100.1	Wheat	nucleus	21.36	36.36
Zm00001d051427_P002	Maize	nucleus	31.55	36.11
Zm00001d017555_P001	Maize	nucleus	29.61	35.06
TraesCS2B01G422000.1	Wheat	nucleus	20.39	35.0
HORVU6Hr1G064720.1	Barley	nucleus, plastid	36.41	33.33
CDY64875	Canola	nucleus	26.21	22.5
CDX80362	Canola	nucleus	17.48	22.22
CDY46957	Canola	nucleus	25.73	21.81
CDY16851	Canola	nucleus	25.24	21.67
CDY40795	Canola	nucleus	25.73	21.29
CDX88025	Canola	nucleus	17.48	19.57
Zm00001d031233_P001	Maize	vacuole	16.99	15.62

Protein Annotations

Gene3D:1.10.30.10	MapMan:35.1	UniProt:A0A078HPY8	EnsemblPlants:CDY40620	ProteinID:CDY40620	ProteinID:CDY40620.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00071471001	InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf	InterPro:IPR009071
InterPro:IPR036910	PFAM:PF00505	PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF222	SMART:SM00398
SUPFAM:SSF47095	UniParc:UPI0004EF3FC7	SEG:seg	:	:	:

Description

BnaA03g53430DBnaA03g53430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPY8]

Coordinates

chrLK032476:+:9598..11775

Molecular Weight (calculated)

22423.1 Da

IEP (calculated)

9.666

GRAVY (calculated)

-0.948

Length

206 amino acids

Sequence
(BLAST)

001: MSLFTSFFGC FVPKSGSRIS SDDGSTSNSK VMSLEKAKRK ADDTWRAPII VTYFPVGSNL SRLSGEMKGG EGKAQAKSSD ERLKTRGKKA GKKVKDPNKP
101: KRPPSAFFVF LEGFRKEFNL ANPDNKSVGA VGKAAGAKWK SMTAEDKAPY VAKAETKKTE YAKTMQKYNM KLANGTSTAG DDDSDKSKSE VNDEEDAASD
201: EEEDDD

Best Arabidopsis Sequence Match ( AT2G17560.1 )
(BLAST)

001: MKGGESKAEA TSTDQRLKTR GRKAGKKTKK DPNQPKRPPS AFFVFLEDFR KEFNLANPNN KSVATVGKAA GARWKAMTDE DKAPYVAKAE SRKTEYIKNV
101: QQYNLKLASG TNREEDDSDK SKSEVDEAVS EEEAEDDD

Arabidopsis Description

HMGB4High mobility group B protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q42344]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.