Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026498.1-P | Field mustard | nucleus | 98.33 | 95.94 |
| CDY64875 | Canola | nucleus | 94.17 | 94.17 |
| CDY46957 | Canola | nucleus | 84.17 | 83.13 |
| CDY40795 | Canola | nucleus | 82.5 | 79.52 |
| AT5G23420.1 | Thale cress | nucleus, plastid | 77.08 | 76.76 |
| KRH75844 | Soybean | cytosol | 28.75 | 60.53 |
| KRH36171 | Soybean | nucleus | 49.58 | 59.5 |
| Solyc04g008820.2.1 | Tomato | nucleus | 52.92 | 59.07 |
| KRG90584 | Soybean | cytosol, nucleus, plastid | 50.0 | 57.42 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.5 | 57.29 |
| PGSC0003DMT400065103 | Potato | nucleus | 52.08 | 51.44 |
| VIT_10s0071g00870.t01 | Wine grape | nucleus | 50.0 | 50.21 |
| Os08t0101100-01 | Rice | nucleus | 39.17 | 46.31 |
| Zm00001d052749_P001 | Maize | nucleus | 40.42 | 45.75 |
| TraesCS7B01G230000.1 | Wheat | nucleus | 40.0 | 44.65 |
| TraesCS7D01G326200.1 | Wheat | nucleus | 39.58 | 43.98 |
| TraesCS7A01G329300.1 | Wheat | nucleus | 39.58 | 43.98 |
| EES14345 | Sorghum | nucleus | 40.0 | 43.44 |
| CDY64458 | Canola | nucleus | 24.17 | 42.34 |
| CDY24349 | Canola | nucleus | 24.17 | 42.34 |
| CDY30359 | Canola | nucleus | 23.75 | 41.91 |
| CDX80362 | Canola | nucleus | 27.5 | 40.74 |
| CDY33643 | Canola | nucleus, plastid | 24.17 | 40.0 |
| CDY26814 | Canola | nucleus | 21.67 | 40.0 |
| CDY65900 | Canola | nucleus, plastid | 23.75 | 39.58 |
| CDX96626 | Canola | nucleus, plastid | 23.75 | 39.31 |
| CDY01357 | Canola | nucleus, plastid | 22.92 | 39.01 |
| CDY29512 | Canola | nucleus, plastid | 21.25 | 37.23 |
| CDX75512 | Canola | nucleus | 21.67 | 36.88 |
| CDX69149 | Canola | nucleus | 21.67 | 36.88 |
| CDX88025 | Canola | nucleus | 27.5 | 35.87 |
| CDY31871 | Canola | plastid | 22.5 | 33.13 |
| CDX78045 | Canola | nucleus | 22.92 | 31.25 |
| CDY29051 | Canola | nucleus | 22.08 | 30.29 |
| CDX90629 | Canola | nucleus | 21.67 | 30.23 |
| HORVU7Hr1G078760.8 | Barley | nucleus, plastid | 34.58 | 28.62 |
| CDX72548 | Canola | plastid | 21.67 | 25.24 |
| CDY40620 | Canola | nucleus, plastid | 21.67 | 25.24 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | UniProt:A0A078FV53 | EnsemblPlants:CDY16851 | ProteinID:CDY16851 | ProteinID:CDY16851.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00094738001 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf |
| InterPro:IPR009071 | InterPro:IPR036910 | PFAM:PF00505 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF147 |
| SMART:SM00398 | SUPFAM:SSF47095 | UniParc:UPI0004EDACCE | SEG:seg | : | : |
Description
BnaA09g05310DBnaA09g05310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FV53]
Coordinates
chrLK032067:-:663941..665618
Molecular Weight (calculated)
26666.6 Da
IEP (calculated)
4.935
GRAVY (calculated)
-1.260
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGGGGGSS KSNAAKQRKR VEAETKDEST AKNNSNTLLR AKDGSAFARC EGCSKNVAVA LISMHSCSLD AKIRVNLEAQ VVEMQAEAKK KPVERKKSTS
101: DEPKAKRVRK AKDDKNKKGS STTSNKPKRP LTAFFIFMND FRKTFKEENP SSNVKDVAKQ GGEKWKSLTE EEKKVYLDKA AELKAEYNKS LESNDADEEE
201: EDEEKQSDDD AEDKQADENE VVDKEPEGKE EAEDEILDDY
101: DEPKAKRVRK AKDDKNKKGS STTSNKPKRP LTAFFIFMND FRKTFKEENP SSNVKDVAKQ GGEKWKSLTE EEKKVYLDKA AELKAEYNKS LESNDADEEE
201: EDEEKQSDDD AEDKQADENE VVDKEPEGKE EAEDEILDDY
001: MAGPSTTSNA PKQRKRVEAE TSSNTSTTLR RAKDGSAFAL CEGCNKSVAV ALISMHNCSL DAKIRVNLEA QVVETQAEAK KKPAEKKKTT SDGPKPKRLK
101: KTNDEKKSSS TSNKPKRPLT AFFIFMSDFR KTFKSEHNGS LAKDAAKIGG EKWKSLTEEE KKVYLDKAAE LKAEYNKSLE SNDADEEEED EEKQSDDVDD
201: AEEKQVDDDD EVEEKEVENT DDDKKEAEGK EEEEEEILDD Y
101: KTNDEKKSSS TSNKPKRPLT AFFIFMSDFR KTFKSEHNGS LAKDAAKIGG EKWKSLTEEE KKVYLDKAAE LKAEYNKSLE SNDADEEEED EEKQSDDVDD
201: AEEKQVDDDD EVEEKEVENT DDDKKEAEGK EEEEEEILDD Y
Arabidopsis Description
HMGB7High mobility group B protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDF9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.