Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 5
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40620 | Canola | nucleus, plastid | 96.12 | 96.12 |
| CDX75512 | Canola | nucleus | 63.59 | 92.91 |
| CDX69149 | Canola | nucleus | 62.62 | 91.49 |
| Bra017723.1-P | Field mustard | nucleus, plastid | 93.69 | 91.04 |
| CDY64458 | Canola | nucleus | 48.54 | 72.99 |
| CDY24349 | Canola | nucleus | 48.06 | 72.26 |
| CDY26814 | Canola | nucleus | 44.17 | 70.0 |
| CDY30359 | Canola | nucleus | 44.66 | 67.65 |
| AT4G35570.1 | Thale cress | nucleus | 39.81 | 65.6 |
| CDY65900 | Canola | nucleus, plastid | 36.89 | 52.78 |
| CDX96626 | Canola | nucleus, plastid | 36.89 | 52.41 |
| CDY33643 | Canola | nucleus, plastid | 36.89 | 52.41 |
| CDY01357 | Canola | nucleus, plastid | 35.44 | 51.77 |
| KRH39434 | Soybean | nucleus | 34.95 | 50.7 |
| CDY29512 | Canola | nucleus, plastid | 33.5 | 50.37 |
| Os02t0670400-01 | Rice | nucleus | 34.95 | 49.66 |
| TraesCS6A01G253900.1 | Wheat | nucleus | 33.5 | 49.64 |
| KRH07880 | Soybean | nucleus | 33.5 | 49.64 |
| TraesCS6B01G271600.1 | Wheat | nucleus | 33.01 | 48.92 |
| TraesCS6D01G235400.1 | Wheat | nucleus | 33.01 | 48.92 |
| OQU85655 | Sorghum | nucleus | 31.55 | 48.87 |
| CDY31871 | Canola | plastid | 33.5 | 42.33 |
| CDX78045 | Canola | nucleus | 34.47 | 40.34 |
| CDX90629 | Canola | nucleus | 33.01 | 39.53 |
| CDY29051 | Canola | nucleus | 33.5 | 39.43 |
| HORVU2Hr1G095890.3 | Barley | nucleus, plastid | 24.27 | 39.06 |
| KXG26906 | Sorghum | nucleus | 21.84 | 37.82 |
| TraesCS2D01G401100.1 | Wheat | nucleus | 21.84 | 37.19 |
| Os04t0564600-01 | Rice | nucleus | 23.79 | 37.12 |
| Zm00001d002659_P001 | Maize | nucleus | 21.84 | 36.59 |
| TraesCS2A01G404100.1 | Wheat | nucleus | 21.36 | 36.36 |
| Zm00001d051427_P002 | Maize | nucleus | 31.55 | 36.11 |
| Zm00001d017555_P001 | Maize | nucleus | 29.61 | 35.06 |
| TraesCS2B01G422000.1 | Wheat | nucleus | 20.39 | 35.0 |
| HORVU6Hr1G064720.1 | Barley | nucleus, plastid | 36.41 | 33.33 |
| CDY64875 | Canola | nucleus | 26.21 | 22.5 |
| CDX80362 | Canola | nucleus | 17.48 | 22.22 |
| CDY46957 | Canola | nucleus | 25.73 | 21.81 |
| CDY40795 | Canola | nucleus | 26.21 | 21.69 |
| CDY16851 | Canola | nucleus | 25.24 | 21.67 |
| CDX88025 | Canola | nucleus | 17.48 | 19.57 |
| Zm00001d031233_P001 | Maize | vacuole | 16.99 | 15.62 |
Protein Annotations
| EnsemblPlants:CDX72548 | EnsemblPlantsGene:GSBRNA2T00100085001 | Gene3D:1.10.30.10 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 |
| InterPro:IPR036910 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF222 | PFAM:PF00505 | PFscan:PS50118 | ProteinID:CDX72548 |
| ProteinID:CDX72548.1 | SEG:seg | SMART:SM00398 | SUPFAM:SSF47095 | UniParc:UPI0004EDE026 | MapMan:35.1 |
Description
BnaC07g45700D
Coordinates
chrLK031796:-:1806809..1810147
Molecular Weight (calculated)
22507.2 Da
IEP (calculated)
9.803
GRAVY (calculated)
-0.974
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLFASFFGC FIPKSSSRIS SDDGSTSNSK VMSLEKPKRK ADDTSRAPII VTYFPVGSNL SRLSREMKGG ESKAQAKSTD ERLKTRGKKA GKKVKDPNKP
101: KRPPSAFFVF LEGFRKEFNL ANPDNKSVGA VGKAAGAKWK SMTAEDKAPY VAKAETKKTE YAKTMQKYNM KLANGTSTAG DDDSDKSKSE VNDEEDAASD
201: EEEDDD
101: KRPPSAFFVF LEGFRKEFNL ANPDNKSVGA VGKAAGAKWK SMTAEDKAPY VAKAETKKTE YAKTMQKYNM KLANGTSTAG DDDSDKSKSE VNDEEDAASD
201: EEEDDD
001: MKGGESKAEA TSTDQRLKTR GRKAGKKTKK DPNQPKRPPS AFFVFLEDFR KEFNLANPNN KSVATVGKAA GARWKAMTDE DKAPYVAKAE SRKTEYIKNV
101: QQYNLKLASG TNREEDDSDK SKSEVDEAVS EEEAEDDD
101: QQYNLKLASG TNREEDDSDK SKSEVDEAVS EEEAEDDD
Arabidopsis Description
HMGB4High mobility group B protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q42344]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.