Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G404100.1 | Wheat | nucleus | 98.33 | 97.52 |
| TraesCS2D01G401100.1 | Wheat | nucleus | 97.5 | 96.69 |
| HORVU2Hr1G095890.3 | Barley | nucleus, plastid | 91.67 | 85.94 |
| KXG26906 | Sorghum | nucleus | 66.67 | 67.23 |
| Os04t0564600-01 | Rice | nucleus | 71.67 | 65.15 |
| Zm00001d002659_P001 | Maize | nucleus | 64.17 | 62.6 |
| TraesCS6B01G271600.1 | Wheat | nucleus | 50.83 | 43.88 |
| TraesCS5B01G354800.1 | Wheat | nucleus | 34.17 | 33.06 |
| CDY64458 | Canola | nucleus | 36.67 | 32.12 |
| CDY26814 | Canola | nucleus | 34.17 | 31.54 |
| CDY24349 | Canola | nucleus | 35.83 | 31.39 |
| KRH39434 | Soybean | nucleus | 36.67 | 30.99 |
| KRH07880 | Soybean | nucleus | 35.83 | 30.94 |
| CDY30359 | Canola | nucleus | 35.0 | 30.88 |
| CDX75512 | Canola | nucleus | 34.17 | 29.08 |
| CDX69149 | Canola | nucleus | 34.17 | 29.08 |
| Bra011624.1-P | Field mustard | nucleus | 34.17 | 29.08 |
| AT2G17560.1 | Thale cress | nucleus | 31.67 | 27.54 |
| Bra002073.1-P | Field mustard | nucleus | 35.0 | 26.75 |
| AT4G35570.1 | Thale cress | nucleus | 26.67 | 25.6 |
| TraesCS7B01G230000.1 | Wheat | nucleus | 36.67 | 20.47 |
| CDX72548 | Canola | plastid | 35.0 | 20.39 |
| CDY40620 | Canola | nucleus, plastid | 35.0 | 20.39 |
| Bra017723.1-P | Field mustard | nucleus, plastid | 34.17 | 19.34 |
| Bra037266.1-P | Field mustard | endoplasmic reticulum, vacuole | 34.17 | 17.08 |
| TraesCS3B01G270900.1 | Wheat | nucleus | 24.17 | 12.08 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G422000.1 | EnsemblPlantsGene:TraesCS2B01G422000 | Gene3D:1.10.30.10 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 |
| InterPro:IPR036910 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF308 | PFAM:PF00505 | PFscan:PS50118 | SEG:seg |
| SMART:SM00398 | SUPFAM:SSF47095 | TIGR:cd01390 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr2B:-:607246472..607248091
Molecular Weight (calculated)
12946.9 Da
IEP (calculated)
9.414
GRAVY (calculated)
-1.204
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSKANGDTA FKASGKNKTA TGGVAKPKRA PTPFFAFLAE FRPQYMEKHP EAKGVAAVTK AAGEKWRSMS DEEKAKYGGK KADAPASKAV NKKESTSSKK
101: TKTNADEEGS DVEDDEEDEE
101: TKTNADEEGS DVEDDEEDEE
001: MKGAKSKAET RSTKLSVTKK PAKGAKGAAK DPNKPKRPSS AFFVFMEDFR VTYKEEHPKN KSVAAVGKAG GEKWKSLSDS EKAPYVAKAD KRKVEYEKNM
101: KAYNKKLEEG PKEDEESDKS VSEVNDEDDA EDGSEEEEDD D
101: KAYNKKLEEG PKEDEESDKS VSEVNDEDDA EDGSEEEEDD D
Arabidopsis Description
HMGB3high mobility group B3 [Source:TAIR;Acc:AT1G20696]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.