Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY64458 | Canola | nucleus | 97.08 | 97.08 |
| CDY30359 | Canola | nucleus | 88.32 | 88.97 |
| Bra002073.1-P | Field mustard | nucleus | 99.27 | 86.62 |
| CDY26814 | Canola | nucleus | 79.56 | 83.85 |
| AT2G17560.1 | Thale cress | nucleus | 74.45 | 73.91 |
| CDX75512 | Canola | nucleus | 71.53 | 69.5 |
| CDX69149 | Canola | nucleus | 70.8 | 68.79 |
| CDY01357 | Canola | nucleus, plastid | 53.28 | 51.77 |
| CDY65900 | Canola | nucleus, plastid | 54.01 | 51.39 |
| CDX96626 | Canola | nucleus, plastid | 53.28 | 50.34 |
| CDY33643 | Canola | nucleus, plastid | 52.55 | 49.66 |
| KRH39434 | Soybean | nucleus | 51.09 | 49.3 |
| CDY29512 | Canola | nucleus, plastid | 48.91 | 48.91 |
| KRH07880 | Soybean | nucleus | 48.91 | 48.2 |
| CDX72548 | Canola | plastid | 72.26 | 48.06 |
| CDY40620 | Canola | nucleus, plastid | 70.8 | 47.09 |
| TraesCS6D01G235400.1 | Wheat | nucleus | 45.26 | 44.6 |
| OQU85655 | Sorghum | nucleus | 43.07 | 44.36 |
| TraesCS6A01G253900.1 | Wheat | nucleus | 44.53 | 43.88 |
| Os02t0670400-01 | Rice | nucleus | 45.99 | 43.45 |
| TraesCS6B01G271600.1 | Wheat | nucleus | 43.8 | 43.17 |
| CDY31871 | Canola | plastid | 49.63 | 41.72 |
| CDX90629 | Canola | nucleus | 49.63 | 39.53 |
| CDY29051 | Canola | nucleus | 50.37 | 39.43 |
| CDX78045 | Canola | nucleus | 49.63 | 38.64 |
| HORVU2Hr1G095890.3 | Barley | nucleus, plastid | 35.77 | 38.28 |
| TraesCS2D01G401100.1 | Wheat | nucleus | 32.85 | 37.19 |
| KXG26906 | Sorghum | nucleus | 32.12 | 36.97 |
| Os04t0564600-01 | Rice | nucleus | 35.04 | 36.36 |
| TraesCS2A01G404100.1 | Wheat | nucleus | 32.12 | 36.36 |
| TraesCS2B01G422000.1 | Wheat | nucleus | 31.39 | 35.83 |
| Zm00001d002659_P001 | Maize | nucleus | 32.12 | 35.77 |
| Zm00001d051427_P002 | Maize | nucleus | 40.15 | 30.56 |
| Zm00001d017555_P001 | Maize | nucleus | 37.96 | 29.89 |
| HORVU6Hr1G064720.1 | Barley | nucleus, plastid | 44.53 | 27.11 |
| CDY46957 | Canola | nucleus | 43.8 | 24.69 |
| CDY16851 | Canola | nucleus | 42.34 | 24.17 |
| CDY64875 | Canola | nucleus | 41.61 | 23.75 |
| CDY40795 | Canola | nucleus | 43.07 | 23.69 |
| CDX80362 | Canola | nucleus | 25.55 | 21.6 |
| CDX88025 | Canola | nucleus | 24.82 | 18.48 |
| Zm00001d031233_P001 | Maize | vacuole | 26.28 | 16.07 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | UniProt:A0A078GG84 | EnsemblPlants:CDY24349 | ProteinID:CDY24349 | ProteinID:CDY24349.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00026557001 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf |
| InterPro:IPR009071 | InterPro:IPR036910 | PFAM:PF00505 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF222 |
| SMART:SM00398 | SUPFAM:SSF47095 | UniParc:UPI0004EE5A8A | SEG:seg | : | : |
Description
BnaA07g02740DBnaA07g02740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GG84]
Coordinates
chrLK032157:-:366142..367398
Molecular Weight (calculated)
15235.3 Da
IEP (calculated)
5.468
GRAVY (calculated)
-1.469
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGGQSKAEA TSTDQRLKTR GRKKKTATKD PNKPKRPPSA FFVFLDDFRR EFKEANPNNK SVAAVGKAAG AKWKSMSEEE KAPYATKAET RKSEYNQSMQ
101: EYNMKLANGT SRGEDDESKS EVDEAGGASD EEEEDDD
101: EYNMKLANGT SRGEDDESKS EVDEAGGASD EEEEDDD
001: MKGGESKAEA TSTDQRLKTR GRKAGKKTKK DPNQPKRPPS AFFVFLEDFR KEFNLANPNN KSVATVGKAA GARWKAMTDE DKAPYVAKAE SRKTEYIKNV
101: QQYNLKLASG TNREEDDSDK SKSEVDEAVS EEEAEDDD
101: QQYNLKLASG TNREEDDSDK SKSEVDEAVS EEEAEDDD
Arabidopsis Description
HMGB4High mobility group B protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q42344]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.