Factsheet for Zm00001d051427_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85655	Sorghum	nucleus	65.56	88.72
Zm00001d017555_P001	Maize	nucleus	78.33	81.03
Os02t0670400-01	Rice	nucleus	63.33	78.62
TraesCS6D01G235400.1	Wheat	nucleus	53.89	69.78
TraesCS6A01G253900.1	Wheat	nucleus	53.33	69.06
TraesCS6B01G271600.1	Wheat	nucleus	52.22	67.63
Zm00001d002659_P001	Maize	nucleus	31.67	46.34
CDX69149	Canola	nucleus	35.56	45.39
HORVU6Hr1G064720.1	Barley	nucleus, plastid	56.67	45.33
Bra011624.1-P	Field mustard	nucleus	35.0	44.68
CDX75512	Canola	nucleus	35.0	44.68
KRH07880	Soybean	nucleus	33.33	43.17
AT2G17560.1	Thale cress	nucleus	32.78	42.75
KRH39434	Soybean	nucleus	33.33	42.25
CDY26814	Canola	nucleus	30.0	41.54
CDY64458	Canola	nucleus	31.11	40.88
CDY24349	Canola	nucleus	30.56	40.15
CDY30359	Canola	nucleus	29.44	38.97
Zm00001d014858_P001	Maize	extracellular, mitochondrion	32.78	37.58
AT4G35570.1	Thale cress	nucleus	23.89	34.4
Bra002073.1-P	Field mustard	nucleus	30.0	34.39
CDY40620	Canola	nucleus, plastid	36.11	31.55
CDX72548	Canola	plastid	36.11	31.55
Zm00001d036355_P001	Maize	nucleus	15.56	31.11
Bra017723.1-P	Field mustard	nucleus, plastid	35.0	29.72
Zm00001d021433_P002	Maize	nucleus	24.44	28.95
Zm00001d052749_P001	Maize	nucleus	32.78	27.83
Zm00001d006306_P006	Maize	vacuole	24.44	25.14
Zm00001d043946_P001	Maize	nucleus, plastid	18.33	23.74
Bra037266.1-P	Field mustard	endoplasmic reticulum, vacuole	30.0	22.5
Zm00001d006298_P001	Maize	cytosol	16.11	21.64
Zm00001d011528_P001	Maize	mitochondrion, plastid	12.78	20.72
Zm00001d031233_P001	Maize	vacuole	24.44	19.64

Protein Annotations

MapMan:35.2	EntrezGene:542455	UniProt:A0A1D6Q6U2	ProteinID:AQK54216.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf	InterPro:IPR009071	InterPro:IPR036910	PFAM:PF00505
PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF308	SMART:SM00398	SUPFAM:SSF47095	UniParc:UPI00084320F4
EnsemblPlantsGene:Zm00001d051427	EnsemblPlants:Zm00001d051427_P002	EnsemblPlants:Zm00001d051427_T002	SEG:seg	:	:

Description

high mobility group protein3 high mobility group protein3

Coordinates

chr4:+:158189751..158191758

Molecular Weight (calculated)

19553.4 Da

IEP (calculated)

6.288

GRAVY (calculated)

-0.962

Length

180 amino acids

Sequence
(BLAST)

001: MKGKANASKK DEARLRAGGG GAGKRKKAAA SGKPKRPPSA FFVFMSEFRQ EYQAQHPGNK SVAAVSHFAL CSPFIFFPCA SADDVLFFRV GGSGEQGSRG
101: KVALYVRASD STWVIMHNVE EKQPYVDQAG QKKQDYEKTK ANIEKESTSS KKAKTDDDDG SKSEVDDEDG GSDEDNDDDE

Best Arabidopsis Sequence Match ( AT2G17560.1 )
(BLAST)

001: MKGGESKAEA TSTDQRLKTR GRKAGKKTKK DPNQPKRPPS AFFVFLEDFR KEFNLANPNN KSVATVGKAA GARWKAMTDE DKAPYVAKAE SRKTEYIKNV
101: QQYNLKLASG TNREEDDSDK SKSEVDEAVS EEEAEDDD

Arabidopsis Description

HMGB4High mobility group B protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q42344]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.