Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0670400-01 | Rice | nucleus | 90.23 | 82.76 |
| TraesCS6D01G235400.1 | Wheat | nucleus | 76.69 | 73.38 |
| TraesCS6A01G253900.1 | Wheat | nucleus | 75.94 | 72.66 |
| TraesCS6B01G271600.1 | Wheat | nucleus | 75.19 | 71.94 |
| Zm00001d017555_P001 | Maize | nucleus | 87.22 | 66.67 |
| Zm00001d051427_P002 | Maize | nucleus | 88.72 | 65.56 |
| KXG26906 | Sorghum | nucleus | 44.36 | 49.58 |
| HORVU6Hr1G064720.1 | Barley | nucleus, plastid | 77.44 | 45.78 |
| Bra011624.1-P | Field mustard | nucleus | 48.12 | 45.39 |
| CDX69149 | Canola | nucleus | 48.12 | 45.39 |
| CDX75512 | Canola | nucleus | 48.12 | 45.39 |
| KRH07880 | Soybean | nucleus | 47.37 | 45.32 |
| KRH39434 | Soybean | nucleus | 47.37 | 44.37 |
| AT2G17560.1 | Thale cress | nucleus | 45.86 | 44.2 |
| CDY64458 | Canola | nucleus | 45.11 | 43.8 |
| CDY24349 | Canola | nucleus | 44.36 | 43.07 |
| CDY30359 | Canola | nucleus | 42.86 | 41.91 |
| CDY26814 | Canola | nucleus | 40.6 | 41.54 |
| Bra002073.1-P | Field mustard | nucleus | 43.61 | 36.94 |
| AT4G35570.1 | Thale cress | nucleus | 33.83 | 36.0 |
| CDY40620 | Canola | nucleus, plastid | 48.87 | 31.55 |
| CDX72548 | Canola | plastid | 48.87 | 31.55 |
| Bra017723.1-P | Field mustard | nucleus, plastid | 46.62 | 29.25 |
| OQU89887 | Sorghum | nucleus | 32.33 | 28.86 |
| EES14345 | Sorghum | nucleus | 43.61 | 26.24 |
| Bra037266.1-P | Field mustard | endoplasmic reticulum, vacuole | 42.11 | 23.33 |
| KXG20955 | Sorghum | cytosol, extracellular, nucleus | 42.11 | 20.14 |
| OQU87294 | Sorghum | plastid | 27.82 | 19.58 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.2 | UniProt:A0A1Z5RQD6 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 | InterPro:IPR036910 | EnsemblPlants:OQU85655 | ProteinID:OQU85655 |
| ProteinID:OQU85655.1 | PFAM:PF00505 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF308 | SMART:SM00398 |
| EnsemblPlantsGene:SORBI_3004G285900 | SUPFAM:SSF47095 | UniParc:UPI0001C80C9D | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr4:-:62839378..62841095
Molecular Weight (calculated)
14697.8 Da
IEP (calculated)
9.318
GRAVY (calculated)
-1.547
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGKADTSKK DEGRLRAGGG AGKRKKAAAS GKPKRPPSAF FVFMSEFRQE YQAQHPGNKS VAAVSKAAGE KWRAMSEQEK QPYVDQAGQK KQDYEKTKAN
101: FEKKESTSSK KAKTDDDDGS KSEVDDEDDE DDE
101: FEKKESTSSK KAKTDDDDGS KSEVDDEDDE DDE
001: MKGGESKAEA TSTDQRLKTR GRKAGKKTKK DPNQPKRPPS AFFVFLEDFR KEFNLANPNN KSVATVGKAA GARWKAMTDE DKAPYVAKAE SRKTEYIKNV
101: QQYNLKLASG TNREEDDSDK SKSEVDEAEA EDDD
101: QQYNLKLASG TNREEDDSDK SKSEVDEAEA EDDD
Arabidopsis Description
HMGB4High mobility group B protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q42344]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.