CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0728000-02	Rice	nucleus	46.76	82.8
TraesCS7A01G552400.1	Wheat	nucleus	44.96	77.64
TraesCSU01G099700.3	Wheat	nucleus	44.96	77.64
TraesCS7D01G538400.2	Wheat	nucleus	44.6	77.02
Zm00001d036355_P001	Maize	nucleus	21.94	67.78
HORVU7Hr1G121390.1	Barley	nucleus, plastid	52.16	65.02
Bra025838.1-P	Field mustard	nucleus, plastid	28.78	58.39
CDY29512	Canola	nucleus, plastid	28.78	58.39
AT1G20693.1	Thale cress	nucleus, plastid	29.86	57.64
CDY33643	Canola	nucleus, plastid	28.78	55.17
CDY65900	Canola	nucleus, plastid	28.42	54.86
VIT_04s0044g00110.t01	Wine grape	nucleus	30.22	54.55
CDX96626	Canola	nucleus, plastid	28.42	54.48
Solyc03g032130.2.1	Tomato	nucleus	21.94	53.98
PGSC0003DMT400003983	Potato	extracellular, nucleus	27.34	53.9
Solyc02g082700.2.1	Tomato	nucleus	26.98	53.57
CDY01357	Canola	nucleus, plastid	26.98	53.19
KRH51597	Soybean	nucleus	29.14	51.59
VIT_18s0122g01190.t01	Wine grape	nucleus	28.06	50.98
Bra012244.1-P	Field mustard	nucleus, plastid	16.91	47.47
CDY31871	Canola	plastid	26.62	45.4
KRH60915	Soybean	nucleus	29.14	44.75
OQU89887	Sorghum	nucleus	23.74	44.3
AT1G20696.2	Thale cress	nucleus, plastid	23.02	43.54
OQU85655	Sorghum	nucleus	20.14	42.11
PGSC0003DMT400048091	Potato	nucleus	23.38	40.62
KXG26906	Sorghum	nucleus	14.03	32.77
PGSC0003DMT400043013	Potato	nucleus	19.42	23.18
EES14345	Sorghum	nucleus	16.55	20.81
OQU87294	Sorghum	plastid	13.31	19.58

Protein Annotations

Gene3D:1.10.30.10	MapMan:35.1	UniProt:A0A194YLV3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf	InterPro:IPR009071	InterPro:IPR036910	EnsemblPlants:KXG20955	ProteinID:KXG20955
ProteinID:KXG20955.1	PFAM:PF00505	PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF284	SMART:SM00398
EnsemblPlantsGene:SORBI_3010G275200	SUPFAM:SSF47095	UniParc:UPI0007F2FEE9	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:+:60834934..60836913

Molecular Weight (calculated)

30678.0 Da

IEP (calculated)

9.606

GRAVY (calculated)

-0.860

Length

278 amino acids

Sequence
(BLAST)

001: MVCAHRKHSE EAQNTPWPAC RLPLHTSQPG ALSRIGDVAR WTPEPAKYLP PCHCRAGPAP FARSTLTSAG TASTPLRHSY AGGRSPSRRI GIPDDNRDPR
101: LYGPTGQWGP RLLSRLAVKS KGAEKPAKGR KGKAGKDPNK PKRAPSAFFV FIFSLLFLEL RFDLFLDGCV CREEFRKEFK EKNPKNKSVA AVGKAAGDRW
201: KSLSESDKAP YVAKANKLKL EYNKAIAAYN KGESTAAAKK APAKEEEEED EEESDKSKSE VNDEDDDEGS DEVYKFLS

Best Arabidopsis Sequence Match ( AT1G20693.2 )
(BLAST)

001: MKGAKSKTET RSSKLSVTKK PAKGAGRGKA AAKDPNKPKR PASAFFVFME DFRETFKKEN PKNKSVATVG KAAGDKWKSL SDSEKAPYVA KAEKRKVEYE
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEED DD

Arabidopsis Description

HMGB2High mobility group B protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O49596]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.