Factsheet for TraesCS7A01G552400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 16595579
extracellular: 19786127
nucleus: 26228564
nucleus: 26579155

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G099700.3	Wheat	nucleus	99.38	99.38
TraesCS7D01G538400.2	Wheat	nucleus	98.14	98.14
Zm00001d014858_P001	Maize	extracellular, mitochondrion	88.82	91.08
Os06t0728000-02	Rice	nucleus	86.96	89.17
Zm00001d036355_P001	Maize	nucleus	37.89	67.78
HORVU7Hr1G121390.1	Barley	nucleus, plastid	93.79	67.71
AT1G20693.1	Thale cress	nucleus, plastid	57.14	63.89
CDY33643	Canola	nucleus, plastid	55.28	61.38
CDX96626	Canola	nucleus, plastid	54.66	60.69
Bra025838.1-P	Field mustard	nucleus, plastid	51.55	60.58
CDY29512	Canola	nucleus, plastid	51.55	60.58
CDY65900	Canola	nucleus, plastid	54.04	60.42
VIT_04s0044g00110.t01	Wine grape	nucleus	57.14	59.74
PGSC0003DMT400003983	Potato	extracellular, nucleus	52.17	59.57
Solyc02g082700.2.1	Tomato	nucleus	51.55	59.29
CDY01357	Canola	nucleus, plastid	50.93	58.16
VIT_18s0122g01190.t01	Wine grape	nucleus	52.8	55.56
KRH51597	Soybean	nucleus	54.04	55.41
Bra012244.1-P	Field mustard	nucleus, plastid	32.3	52.53
Solyc03g032130.2.1	Tomato	nucleus	36.02	51.33
KRH60915	Soybean	nucleus	56.52	50.28
AT1G20696.2	Thale cress	nucleus, plastid	44.72	48.98
CDY31871	Canola	plastid	47.83	47.24
TraesCS6A01G253900.1	Wheat	nucleus	39.13	45.32
KXG20955	Sorghum	cytosol, extracellular, nucleus	77.64	44.96
TraesCS5A01G352100.2	Wheat	nucleus	46.58	43.35
PGSC0003DMT400048091	Potato	nucleus	42.24	42.5
TraesCS2A01G404100.1	Wheat	nucleus	28.57	38.02
TraesCS3A01G242800.1	Wheat	nucleus	22.98	28.68
PGSC0003DMT400043013	Potato	nucleus	36.65	25.32
TraesCS7A01G329300.1	Wheat	nucleus	31.68	23.61

Protein Annotations

EnsemblPlants:TraesCS7A01G552400.1	EnsemblPlantsGene:TraesCS7A01G552400	Gene3D:1.10.30.10	InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf	InterPro:IPR009071
InterPro:IPR036910	PANTHER:PTHR13711	PANTHER:PTHR13711:SF284	PFAM:PF00505	PFscan:PS50118	SEG:seg
SMART:SM00398	SUPFAM:SSF47095	TIGR:cd01390	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr7A:+:725433499..725434853

Molecular Weight (calculated)

17214.7 Da

IEP (calculated)

7.037

GRAVY (calculated)

-1.253

Length

161 amino acids

Sequence
(BLAST)

001: MKGAKSKGAA KADAKLAVKS KGAEKPAAKG KKGKAGKDPN KPKRAPSAFF VFMGEFREEF KQKNPKNKSV AAVGKAAGER WKSLSESEKA PYVAKANKLK
101: GEYNKAIAAY NKGESAAAAA PKKAAAKEVE EEDEEESDKS KSEINDDDDD EGSDEDEDDD E

Best Arabidopsis Sequence Match ( AT1G20693.2 )
(BLAST)

001: MKGAKSKTET RSSKLSVTKK PAKGAGRGKA AAKDPNKPKR PASAFFVFME DFRETFKKEN PKNKSVATVG KAAGDKWKSL SDSEKAPYVA KAEKRKVEYE
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEED DD

Arabidopsis Description

HMGB2High mobility group B protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O49596]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.