Factsheet for HORVU7Hr1G121390.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G099700.3	Wheat	nucleus	68.16	94.41
TraesCS7A01G552400.1	Wheat	nucleus	67.71	93.79
TraesCS7D01G538400.2	Wheat	nucleus	67.26	93.17
Zm00001d014858_P001	Maize	extracellular, mitochondrion	60.99	86.62
Os06t0728000-02	Rice	nucleus	59.64	84.71
Zm00001d036355_P001	Maize	nucleus	27.35	67.78
AT1G20693.1	Thale cress	nucleus, plastid	39.46	61.11
CDY29512	Canola	nucleus, plastid	37.22	60.58
Bra025838.1-P	Field mustard	nucleus, plastid	37.22	60.58
CDY33643	Canola	nucleus, plastid	39.01	60.0
CDX96626	Canola	nucleus, plastid	38.56	59.31
PGSC0003DMT400003983	Potato	extracellular, nucleus	37.22	58.87
Solyc02g082700.2.1	Tomato	nucleus	36.77	58.57
CDY65900	Canola	nucleus, plastid	37.22	57.64
VIT_04s0044g00110.t01	Wine grape	nucleus	39.46	57.14
CDY01357	Canola	nucleus, plastid	35.43	56.03
KRH51597	Soybean	nucleus	38.56	54.78
VIT_18s0122g01190.t01	Wine grape	nucleus	36.32	52.94
KXG20955	Sorghum	cytosol, extracellular, nucleus	65.02	52.16
Bra012244.1-P	Field mustard	nucleus, plastid	22.42	50.51
AT1G20696.2	Thale cress	nucleus, plastid	32.29	48.98
Solyc03g032130.2.1	Tomato	nucleus	24.66	48.67
KRH60915	Soybean	nucleus	38.56	47.51
CDY31871	Canola	plastid	34.08	46.63
PGSC0003DMT400048091	Potato	nucleus	30.49	42.5
HORVU2Hr1G095890.3	Barley	nucleus, plastid	22.87	39.84
HORVU5Hr1G087340.1	Barley	mitochondrion	32.29	29.75
HORVU6Hr1G064720.1	Barley	nucleus, plastid	29.15	28.89
HORVU3Hr1G060620.1	Barley	nucleus	15.7	26.72
PGSC0003DMT400043013	Potato	nucleus	25.56	24.46
HORVU7Hr1G078760.8	Barley	nucleus, plastid	22.87	17.59
HORVU4Hr1G000120.13	Barley	cytosol	18.83	14.53

Protein Annotations

Gene3D:1.10.30.10	MapMan:35.1	UniProt:A0A287Y1E0	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:HMG_box_dom
InterPro:HMG_box_dom_sf	EnsemblPlantsGene:HORVU7Hr1G121390	EnsemblPlants:HORVU7Hr1G121390.1	InterPro:IPR009071	InterPro:IPR036910	PFAM:PF00505
PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF284	SMART:SM00398	SUPFAM:SSF47095	UniParc:UPI000B460797
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr7H:+:654028814..654030893

Molecular Weight (calculated)

24101.4 Da

IEP (calculated)

10.577

GRAVY (calculated)

-0.997

Length

223 amino acids

Sequence
(BLAST)

001: PSLVSVSVPF LPSFPQTRPG APSPPQPQVS LPRFASIRPI PTGFRRPSSG SDRISRFRRR KPAMKGAKSK GAAKADTKLA VKSKGAEKPA AKGKKGKAGK
101: DPNKPKRAPS AFFVFMGEFR EEFKQKNPKN KSVAAVGKAA GERWKSLSES EKAPFVAKAN KLKGEYNKAI AAYNKGESTA AAPKKAAAKE VEEEDEEESD
201: KSKSEINDDD DDEGSDEEPI HLH

Best Arabidopsis Sequence Match ( AT1G20696.2 )
(BLAST)

001: MKGAKSKAET RSTKLSVTKK PAKGAKGAAK DPNKPKRPSS AFFVFMEDFR VTYKEEHPKN KSVAAVGKAG GEKWKSLSDS EKAPYVAKAD KRKVEYEKNM
101: KAYNKKLVIA LRKMRNLTSQ FQRLTMRMML RMAVKRRKTM IKKLKLW

Arabidopsis Description

HMGB3high mobility group B3 [Source:TAIR;Acc:AT1G20696]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.