Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01357 | Canola | nucleus, plastid | 82.21 | 95.04 |
| CDY33643 | Canola | nucleus, plastid | 74.85 | 84.14 |
| CDY29512 | Canola | nucleus, plastid | 70.55 | 83.94 |
| CDX96626 | Canola | nucleus, plastid | 73.01 | 82.07 |
| CDY65900 | Canola | nucleus, plastid | 70.55 | 79.86 |
| AT1G20693.1 | Thale cress | nucleus, plastid | 65.64 | 74.31 |
| Solyc02g082700.2.1 | Tomato | nucleus | 53.37 | 62.14 |
| PGSC0003DMT400003983 | Potato | extracellular, nucleus | 53.37 | 61.7 |
| VIT_18s0122g01190.t01 | Wine grape | nucleus | 57.06 | 60.78 |
| AT1G20696.2 | Thale cress | nucleus, plastid | 54.6 | 60.54 |
| KRH51597 | Soybean | nucleus | 55.83 | 57.96 |
| VIT_04s0044g00110.t01 | Wine grape | nucleus | 54.6 | 57.79 |
| TraesCS5B01G354800.1 | Wheat | nucleus | 42.94 | 56.45 |
| TraesCS5D01G359600.1 | Wheat | nucleus | 42.33 | 55.65 |
| Os09t0551600-01 | Rice | nucleus | 41.72 | 53.54 |
| Solyc03g032130.2.1 | Tomato | nucleus | 36.81 | 53.1 |
| GSMUA_Achr2P03630_001 | Banana | nucleus | 49.08 | 51.95 |
| CDX75512 | Canola | nucleus | 44.17 | 51.06 |
| CDY26814 | Canola | nucleus | 40.49 | 50.77 |
| GSMUA_Achr9P21200_001 | Banana | nucleus | 47.85 | 50.65 |
| CDX69149 | Canola | nucleus | 43.56 | 50.35 |
| KRH60915 | Soybean | nucleus | 55.83 | 50.28 |
| GSMUA_Achr11P... | Banana | nucleus | 46.63 | 50.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.94 | 49.65 |
| CDY24349 | Canola | nucleus | 41.72 | 49.63 |
| GSMUA_Achr10P... | Banana | nucleus | 46.63 | 49.35 |
| Zm00001d014858_P001 | Maize | extracellular, mitochondrion | 47.24 | 49.04 |
| CDY64458 | Canola | nucleus | 41.1 | 48.91 |
| PGSC0003DMT400048091 | Potato | nucleus | 47.85 | 48.75 |
| Os06t0728000-02 | Rice | nucleus | 46.63 | 48.41 |
| TraesCSU01G099700.3 | Wheat | nucleus | 47.24 | 47.83 |
| TraesCS7D01G538400.2 | Wheat | nucleus | 47.24 | 47.83 |
| TraesCS7A01G552400.1 | Wheat | nucleus | 47.24 | 47.83 |
| CDY30359 | Canola | nucleus | 39.88 | 47.79 |
| Zm00001d021433_P002 | Maize | nucleus | 42.33 | 45.39 |
| CDX78045 | Canola | nucleus | 47.24 | 43.75 |
| OQU89887 | Sorghum | nucleus | 39.88 | 43.62 |
| CDX90629 | Canola | nucleus | 45.4 | 43.02 |
| CDY29051 | Canola | nucleus | 45.4 | 42.29 |
| Zm00001d036355_P001 | Maize | nucleus | 23.31 | 42.22 |
| TraesCS5A01G352100.2 | Wheat | nucleus | 43.56 | 41.04 |
| Zm00001d006306_P006 | Maize | vacuole | 43.56 | 40.57 |
| Zm00001d006298_P001 | Maize | cytosol | 31.29 | 38.06 |
| HORVU7Hr1G121390.1 | Barley | nucleus, plastid | 46.63 | 34.08 |
| CDX72548 | Canola | plastid | 42.33 | 33.5 |
| CDY40620 | Canola | nucleus, plastid | 42.33 | 33.5 |
| HORVU5Hr1G087340.1 | Barley | mitochondrion | 42.94 | 28.93 |
| KXG20955 | Sorghum | cytosol, extracellular, nucleus | 45.4 | 26.62 |
| PGSC0003DMT400043013 | Potato | nucleus | 36.2 | 25.32 |
| CDX80362 | Canola | nucleus | 25.15 | 25.31 |
| CDY46957 | Canola | nucleus | 35.58 | 23.87 |
| CDY64875 | Canola | nucleus | 34.36 | 23.33 |
| CDY16851 | Canola | nucleus | 33.13 | 22.5 |
| CDY40795 | Canola | nucleus | 34.36 | 22.49 |
| CDX88025 | Canola | nucleus | 23.31 | 20.65 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | UniProt:A0A078H252 | EnsemblPlants:CDY31871 | ProteinID:CDY31871 | ProteinID:CDY31871.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00050607001 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf |
| InterPro:IPR009071 | InterPro:IPR036910 | PFAM:PF00505 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF222 |
| SMART:SM00398 | SUPFAM:SSF47095 | UniParc:UPI0004EDB8A8 | SEG:seg | : | : |
Description
BnaC07g15210DBnaC07g15210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H252]
Coordinates
chrLK032281:-:233817..235477
Molecular Weight (calculated)
18097.3 Da
IEP (calculated)
9.677
GRAVY (calculated)
-0.955
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGGNSKSDS RNSKLSVNKK PTKASKAAAK DPNKPKRPAS AFFVFMEDFR QTYKKEHPSN KSVAAVGKAG GEKWKSLSDS EKAPYVAKAD KRKVEYEKTM
101: KAYNKKLEEG PKGDEESDDK SVSEVSEEED ADDRSDEVRS LILLTCLYMT LARCLFSLSV SLS
101: KAYNKKLEEG PKGDEESDDK SVSEVSEEED ADDRSDEVRS LILLTCLYMT LARCLFSLSV SLS
001: MKGAKSKAET RSTKLSVTKK PAKGAKGAAK DPNKPKRPSS AFFVFMEDFR VTYKEEHPKN KSVAAVGKAG GEKWKSLSDS EKAPYVAKAD KRKVEYEKNM
101: KAYNKKLEEG PKEDEESDKS VSEVNDEDDA EDGSEEEEDD D
101: KAYNKKLEEG PKEDEESDKS VSEVNDEDDA EDGSEEEEDD D
Arabidopsis Description
HMGB3high mobility group B3 [Source:TAIR;Acc:AT1G20696]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.