Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G359600.1 | Wheat | nucleus | 96.77 | 96.77 |
| Os09t0551600-01 | Rice | nucleus | 78.23 | 76.38 |
| TraesCS5A01G352100.2 | Wheat | nucleus | 93.55 | 67.05 |
| Zm00001d021433_P002 | Maize | nucleus | 81.45 | 66.45 |
| OQU89887 | Sorghum | nucleus | 69.35 | 57.72 |
| GSMUA_Achr10P... | Banana | nucleus | 69.35 | 55.84 |
| GSMUA_Achr2P03630_001 | Banana | nucleus | 68.55 | 55.19 |
| GSMUA_Achr9P21200_001 | Banana | nucleus | 68.55 | 55.19 |
| Solyc02g082700.2.1 | Tomato | nucleus | 62.1 | 55.0 |
| PGSC0003DMT400003983 | Potato | extracellular, nucleus | 62.1 | 54.61 |
| VIT_04s0044g00110.t01 | Wine grape | nucleus | 66.94 | 53.9 |
| Zm00001d006298_P001 | Maize | cytosol | 58.06 | 53.73 |
| GSMUA_Achr11P... | Banana | nucleus | 65.32 | 53.29 |
| Zm00001d006306_P006 | Maize | vacuole | 75.0 | 53.14 |
| VIT_18s0122g01190.t01 | Wine grape | nucleus | 64.52 | 52.29 |
| CDY29512 | Canola | nucleus, plastid | 57.26 | 51.82 |
| Bra025838.1-P | Field mustard | nucleus, plastid | 57.26 | 51.82 |
| GSMUA_AchrUn_... | Banana | nucleus | 58.87 | 51.77 |
| CDY01357 | Canola | nucleus, plastid | 58.06 | 51.06 |
| CDX96626 | Canola | nucleus, plastid | 58.87 | 50.34 |
| CDY33643 | Canola | nucleus, plastid | 58.06 | 49.66 |
| AT1G20693.1 | Thale cress | nucleus, plastid | 57.26 | 49.31 |
| CDY65900 | Canola | nucleus, plastid | 56.45 | 48.61 |
| KRH51597 | Soybean | nucleus | 61.29 | 48.41 |
| Solyc03g032130.2.1 | Tomato | nucleus | 42.74 | 46.9 |
| HORVU5Hr1G087340.1 | Barley | mitochondrion | 91.13 | 46.69 |
| AT1G20696.2 | Thale cress | nucleus, plastid | 52.42 | 44.22 |
| CDY31871 | Canola | plastid | 56.45 | 42.94 |
| KRH60915 | Soybean | nucleus | 62.1 | 42.54 |
| Bra012244.1-P | Field mustard | nucleus, plastid | 33.87 | 42.42 |
| PGSC0003DMT400048091 | Potato | nucleus | 54.03 | 41.88 |
| TraesCS6B01G271600.1 | Wheat | nucleus | 40.32 | 35.97 |
| TraesCS2B01G422000.1 | Wheat | nucleus | 33.06 | 34.17 |
| PGSC0003DMT400043013 | Potato | nucleus | 45.16 | 24.03 |
| TraesCS7B01G230000.1 | Wheat | nucleus | 34.68 | 20.0 |
| TraesCS3B01G270900.1 | Wheat | nucleus | 32.26 | 16.67 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G354800.1 | EnsemblPlantsGene:TraesCS5B01G354800 | Gene3D:1.10.30.10 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 |
| InterPro:IPR036910 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF284 | PFAM:PF00505 | PFscan:PS50118 | SMART:SM00398 |
| SUPFAM:SSF47095 | TIGR:cd01390 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr5B:+:533748099..533750342
Molecular Weight (calculated)
13672.8 Da
IEP (calculated)
9.889
GRAVY (calculated)
-1.289
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MKAKAGSRAG DSRLTVKKSK AEKDPNKPKR PPSAFFVFMD TFRKEYKEKH PDVKQVSVVG KAGGEKWKSL SDAEKAPYTA KAEKLKAEYT KKINAYNNPQ
101: AGEASGDSDK SKSEVNDEDS EGDE
101: AGEASGDSDK SKSEVNDEDS EGDE
001: MKTAKGKDKV KTTKEALKPV DDRKVGKRKA PAEKPTKRET RKEKKAKKDP NKPKRAPSAF FVFLEDFRVT FKKENPNVKA VSAVGKAGGQ KWKSMSQAEK
101: APYEEKAAKR KAEYEKQMDA YNKNLEEGSD ESEKSRSEIN DEDEASGEVT IPLSNEELLE KEAAGDDEEE EEEEDDDDDD DEEED
101: APYEEKAAKR KAEYEKQMDA YNKNLEEGSD ESEKSRSEIN DEDEASGEVT IPLSNEELLE KEAAGDDEEE EEEEDDDDDD DEEED
Arabidopsis Description
HMGB1high mobility group B1 [Source:TAIR;Acc:AT3G51880]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.