Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 1
- mitochondrion 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01357 | Canola | nucleus, plastid | 60.54 | 63.12 |
| CDY29512 | Canola | nucleus, plastid | 58.5 | 62.77 |
| Bra025838.1-P | Field mustard | nucleus, plastid | 58.5 | 62.77 |
| CDY33643 | Canola | nucleus, plastid | 60.54 | 61.38 |
| AT1G20693.1 | Thale cress | nucleus, plastid | 59.18 | 60.42 |
| CDY65900 | Canola | nucleus, plastid | 59.18 | 60.42 |
| PGSC0003DMT400003983 | Potato | extracellular, nucleus | 57.82 | 60.28 |
| CDX96626 | Canola | nucleus, plastid | 59.18 | 60.0 |
| Solyc02g082700.2.1 | Tomato | nucleus | 57.14 | 60.0 |
| CDY31871 | Canola | plastid | 60.54 | 54.6 |
| VIT_18s0122g01190.t01 | Wine grape | nucleus | 55.1 | 52.94 |
| TraesCS5B01G354800.1 | Wheat | nucleus | 44.22 | 52.42 |
| TraesCS5D01G359600.1 | Wheat | nucleus | 44.22 | 52.42 |
| VIT_04s0044g00110.t01 | Wine grape | nucleus | 54.42 | 51.95 |
| KRH51597 | Soybean | nucleus | 53.06 | 49.68 |
| Bra012244.1-P | Field mustard | nucleus, plastid | 33.33 | 49.49 |
| PGSC0003DMT400048091 | Potato | nucleus | 52.38 | 48.12 |
| GSMUA_Achr2P03630_001 | Banana | nucleus | 50.34 | 48.05 |
| Os09t0551600-01 | Rice | nucleus | 41.5 | 48.03 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.9 | 46.81 |
| GSMUA_Achr9P21200_001 | Banana | nucleus | 48.98 | 46.75 |
| GSMUA_Achr10P... | Banana | nucleus | 48.98 | 46.75 |
| Zm00001d014858_P001 | Maize | extracellular, mitochondrion | 49.66 | 46.5 |
| Zm00001d036355_P001 | Maize | nucleus | 27.89 | 45.56 |
| GSMUA_Achr11P... | Banana | nucleus | 46.94 | 45.39 |
| TraesCSU01G099700.3 | Wheat | nucleus | 49.66 | 45.34 |
| TraesCS7D01G538400.2 | Wheat | nucleus | 49.66 | 45.34 |
| TraesCS7A01G552400.1 | Wheat | nucleus | 48.98 | 44.72 |
| Os06t0728000-02 | Rice | nucleus | 47.62 | 44.59 |
| OQU89887 | Sorghum | nucleus | 44.9 | 44.3 |
| Solyc03g032130.2.1 | Tomato | nucleus | 34.01 | 44.25 |
| AT2G17560.1 | Thale cress | nucleus | 41.5 | 44.2 |
| KRH60915 | Soybean | nucleus | 53.06 | 43.09 |
| Zm00001d021433_P002 | Maize | nucleus | 44.22 | 42.76 |
| AT4G35570.1 | Thale cress | nucleus | 33.33 | 39.2 |
| AT3G51880.2 | Thale cress | nucleus | 47.62 | 37.84 |
| Zm00001d006306_P006 | Maize | vacuole | 44.22 | 37.14 |
| TraesCS5A01G352100.2 | Wheat | nucleus | 43.54 | 36.99 |
| Zm00001d006298_P001 | Maize | cytosol | 30.61 | 33.58 |
| HORVU7Hr1G121390.1 | Barley | nucleus, plastid | 48.98 | 32.29 |
| HORVU5Hr1G087340.1 | Barley | mitochondrion | 42.86 | 26.03 |
| AT2G34450.2 | Thale cress | nucleus, plastid | 26.53 | 25.66 |
| PGSC0003DMT400043013 | Potato | nucleus | 39.46 | 24.89 |
| KXG20955 | Sorghum | cytosol, extracellular, nucleus | 43.54 | 23.02 |
| AT5G23420.1 | Thale cress | nucleus, plastid | 31.97 | 19.5 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | EntrezGene:838659 | ProteinID:AEE30010.1 | ArrayExpress:AT1G20696 | EnsemblPlantsGene:AT1G20696 |
| RefSeq:AT1G20696 | TAIR:AT1G20696 | RefSeq:AT1G20696-TAIR-G | EnsemblPlants:AT1G20696.2 | TAIR:AT1G20696.2 | ncoils:Coil |
| Symbol:HMGB3 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 | InterPro:IPR036910 | RefSeq:NP_001031075.1 |
| PFAM:PF00505 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF222 |
| SMART:SM00398 | SUPFAM:SSF47095 | UniParc:UPI00005DBF4A | SEG:seg | : | : |
Description
HMGB3high mobility group B3 [Source:TAIR;Acc:AT1G20696]
Coordinates
chr1:+:7179453..7181499
Molecular Weight (calculated)
16887.1 Da
IEP (calculated)
11.371
GRAVY (calculated)
-0.892
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGAKSKAET RSTKLSVTKK PAKGAKGAAK DPNKPKRPSS AFFVFMEDFR VTYKEEHPKN KSVAAVGKAG GEKWKSLSDS EKAPYVAKAD KRKVEYEKNM
101: KAYNKKLVIA LRKMRNLTSQ FQRLTMRMML RMAVKRRKTM IKKLKLW
101: KAYNKKLVIA LRKMRNLTSQ FQRLTMRMML RMAVKRRKTM IKKLKLW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.