Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0551600-01 | Rice | nucleus | 60.45 | 63.78 |
| Zm00001d006306_P006 | Maize | vacuole | 80.6 | 61.71 |
| Zm00001d021433_P002 | Maize | nucleus | 67.16 | 59.21 |
| TraesCS5D01G359600.1 | Wheat | nucleus | 54.48 | 58.87 |
| TraesCS5B01G354800.1 | Wheat | nucleus | 53.73 | 58.06 |
| OQU89887 | Sorghum | nucleus | 58.21 | 52.35 |
| Solyc03g032130.2.1 | Tomato | nucleus | 40.3 | 47.79 |
| GSMUA_Achr10P... | Banana | nucleus | 48.51 | 42.21 |
| Solyc02g082700.2.1 | Tomato | nucleus | 44.03 | 42.14 |
| PGSC0003DMT400003983 | Potato | extracellular, nucleus | 44.03 | 41.84 |
| TraesCS5A01G352100.2 | Wheat | nucleus | 53.73 | 41.62 |
| GSMUA_Achr2P03630_001 | Banana | nucleus | 47.76 | 41.56 |
| GSMUA_Achr9P21200_001 | Banana | nucleus | 47.76 | 41.56 |
| GSMUA_Achr11P... | Banana | nucleus | 46.27 | 40.79 |
| VIT_04s0044g00110.t01 | Wine grape | nucleus | 46.27 | 40.26 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.79 | 39.72 |
| VIT_18s0122g01190.t01 | Wine grape | nucleus | 44.78 | 39.22 |
| CDY29512 | Canola | nucleus, plastid | 39.55 | 38.69 |
| Bra025838.1-P | Field mustard | nucleus, plastid | 39.55 | 38.69 |
| KRH51597 | Soybean | nucleus | 44.03 | 37.58 |
| CDX96626 | Canola | nucleus, plastid | 40.3 | 37.24 |
| CDY65900 | Canola | nucleus, plastid | 39.55 | 36.81 |
| AT1G20693.1 | Thale cress | nucleus, plastid | 38.81 | 36.11 |
| CDY33643 | Canola | nucleus, plastid | 38.81 | 35.86 |
| CDY01357 | Canola | nucleus, plastid | 37.31 | 35.46 |
| Zm00001d014858_P001 | Maize | extracellular, mitochondrion | 41.04 | 35.03 |
| KRH60915 | Soybean | nucleus | 45.52 | 33.7 |
| CDY31871 | Canola | plastid | 38.06 | 31.29 |
| PGSC0003DMT400048091 | Potato | nucleus | 37.31 | 31.25 |
| AT1G20696.2 | Thale cress | nucleus, plastid | 33.58 | 30.61 |
| HORVU5Hr1G087340.1 | Barley | mitochondrion | 51.49 | 28.51 |
| Zm00001d002659_P001 | Maize | nucleus | 24.63 | 26.83 |
| Zm00001d036355_P001 | Maize | nucleus | 15.67 | 23.33 |
| Bra012244.1-P | Field mustard | nucleus, plastid | 14.93 | 20.2 |
| Zm00001d043946_P001 | Maize | nucleus, plastid | 19.4 | 18.7 |
| PGSC0003DMT400043013 | Potato | nucleus | 31.34 | 18.03 |
| Zm00001d017555_P001 | Maize | nucleus | 21.64 | 16.67 |
| Zm00001d051427_P002 | Maize | nucleus | 21.64 | 16.11 |
| Zm00001d011528_P001 | Maize | mitochondrion, plastid | 11.94 | 14.41 |
| Zm00001d052749_P001 | Maize | nucleus | 20.9 | 13.21 |
| Zm00001d031233_P001 | Maize | vacuole | 11.94 | 7.14 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | UniProt:A0A1D6EUL6 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 | InterPro:IPR036910 | ProteinID:ONM23348.1 | PFAM:PF00505 |
| PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF284 | SMART:SM00398 | SUPFAM:SSF47095 | UniParc:UPI0008457207 |
| EnsemblPlantsGene:Zm00001d006298 | EnsemblPlants:Zm00001d006298_P001 | EnsemblPlants:Zm00001d006298_T001 | : | : | : |
Description
High mobility group B protein 2
Coordinates
chr2:+:204036760..204047736
Molecular Weight (calculated)
15046.5 Da
IEP (calculated)
8.643
GRAVY (calculated)
-1.022
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSRARSSGG DSREEFRKDY KEKHPNVKQV SVIGKAGGDM WKSLSDAEKA PYVSKAEKLK VEYTKKMDAY NNKQSGGPTE SGDSDKSKSE VNDGDEEVKA
101: NPPVPCPTLV FHCWFYFVDP KPYWSRPFEI GFAG
101: NPPVPCPTLV FHCWFYFVDP KPYWSRPFEI GFAG
1: MICREDFRVT YKEEHPKNKS VAAVGKAGGE KWKSLSDSEK APYVAKADKR KVEYEKNMKA YNKKLEEGPK EDEESDKSVS EVNDEDDAED GSEEVRRR
Arabidopsis Description
HMGB3high mobility group B3 [Source:TAIR;Acc:AT1G20696]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.