Factsheet for PGSC0003DMT400003983

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g082700.2.1	Tomato	nucleus	98.58	99.29
Bra025838.1-P	Field mustard	nucleus, plastid	63.83	65.69
CDY29512	Canola	nucleus, plastid	63.83	65.69
CDY65900	Canola	nucleus, plastid	66.67	65.28
CDX96626	Canola	nucleus, plastid	66.67	64.83
AT1G20693.1	Thale cress	nucleus, plastid	65.96	64.58
CDY33643	Canola	nucleus, plastid	65.96	64.14
CDY01357	Canola	nucleus, plastid	63.83	63.83
TraesCS5D01G359600.1	Wheat	nucleus	56.03	63.71
GSMUA_Achr2P03630_001	Banana	nucleus	69.5	63.64
VIT_18s0122g01190.t01	Wine grape	nucleus	68.09	62.75
GSMUA_Achr10P...	Banana	nucleus	68.09	62.34
TraesCS5B01G354800.1	Wheat	nucleus	54.61	62.1
VIT_04s0044g00110.t01	Wine grape	nucleus	66.67	61.04
GSMUA_AchrUn_...	Banana	nucleus	60.28	60.28
Os09t0551600-01	Rice	nucleus	53.9	59.84
GSMUA_Achr9P21200_001	Banana	nucleus	65.25	59.74
GSMUA_Achr11P...	Banana	nucleus	63.83	59.21
AT1G20696.2	Thale cress	nucleus, plastid	60.28	57.82
Bra012244.1-P	Field mustard	nucleus, plastid	40.43	57.58
PGSC0003DMT400048091	Potato	nucleus	65.25	57.5
Os06t0728000-02	Rice	nucleus	61.7	55.41
Zm00001d014858_P001	Maize	extracellular, mitochondrion	61.7	55.41
KRH51597	Soybean	nucleus	61.7	55.41
Zm00001d021433_P002	Maize	nucleus	58.16	53.95
CDY31871	Canola	plastid	61.7	53.37
TraesCSU01G099700.3	Wheat	nucleus	60.28	52.8
TraesCS7D01G538400.2	Wheat	nucleus	60.28	52.8
TraesCS7A01G552400.1	Wheat	nucleus	59.57	52.17
KRH60915	Soybean	nucleus	63.83	49.72
Zm00001d036355_P001	Maize	nucleus	30.5	47.78
OQU89887	Sorghum	nucleus	50.35	47.65
PGSC0003DMT400021917	Potato	nucleus	58.16	46.86
Zm00001d006306_P006	Maize	vacuole	56.03	45.14
TraesCS5A01G352100.2	Wheat	nucleus	55.32	45.09
Zm00001d006298_P001	Maize	cytosol	41.84	44.03
HORVU7Hr1G121390.1	Barley	nucleus, plastid	58.87	37.22
HORVU5Hr1G087340.1	Barley	mitochondrion	53.19	30.99
PGSC0003DMT400043013	Potato	nucleus	46.81	28.33
KXG20955	Sorghum	cytosol, extracellular, nucleus	53.9	27.34
PGSC0003DMT400065103	Potato	nucleus	34.75	20.16

Protein Annotations

Gene3D:1.10.30.10	EntrezGene:102594501	MapMan:35.1	EMBL:AJ002391	ProteinID:CAA05365	ProteinID:CAA05365.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf	InterPro:IPR009071
InterPro:IPR036910	UniProt:M0ZMN4	PFAM:PF00505	EnsemblPlantsGene:PGSC0003DMG400001567	PGSC:PGSC0003DMG400001567	EnsemblPlants:PGSC0003DMT400003983
PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF222	SMART:SM00398	SUPFAM:SSF47095	UniParc:UPI00029639C9
RefSeq:XP_006340837.1	SEG:seg	:	:	:	:

Description

High mobility group protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001567]

Coordinates

chr2:-:38506743..38508463

Molecular Weight (calculated)

15816.1 Da

IEP (calculated)

7.657

GRAVY (calculated)

-1.606

Length

141 amino acids

Sequence
(BLAST)

001: MKGAKSKAKA DTKLGVRKKA TESKKAKNAA KDPNKPKRPP SAFFVFMEEF RKTYKEKHPN NKSVAVVGKA GGDKWKQLSD EEKAPYQAKA EKRKAEYQKN
101: MDAYNKKLAA GDADDEESDK SKSEVHDDDE DDDGSEEEDD D

Best Arabidopsis Sequence Match ( AT1G20696.1 )
(BLAST)

001: MKGAKSKAET RSTKLSVTKK PAKGAKGAAK DPNKPKRPSS AFFVFMEDFR VTYKEEHPKN KSVAAVGKAG GEKWKSLSDS EKAPYVAKAD KRKVEYEKNM
101: KAYNKKLEEG PKEDEESDKS VSEVNDEDDA EDGSEEEEDD D

Arabidopsis Description

HMGB3high mobility group B3 [Source:TAIR;Acc:AT1G20696]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.