Factsheet for PGSC0003DMT400065103

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g008820.2.1	Tomato	nucleus	83.13	93.95
KRH75844	Soybean	cytosol	27.16	57.89
KRH36171	Soybean	nucleus	46.5	56.5
GSMUA_AchrUn_...	Banana	nucleus	46.09	56.28
KRG90584	Soybean	cytosol, nucleus, plastid	47.33	55.02
VIT_10s0071g00870.t01	Wine grape	nucleus	52.26	53.14
CDY64875	Canola	nucleus	51.85	52.5
CDY16851	Canola	nucleus	51.44	52.08
Bra026498.1-P	Field mustard	nucleus	52.26	51.63
AT5G23420.1	Thale cress	nucleus, plastid	50.62	51.04
CDY46957	Canola	nucleus	51.03	51.03
CDY40795	Canola	nucleus	52.26	51.0
Bra029371.1-P	Field mustard	nucleus	50.62	50.62
Zm00001d052749_P001	Maize	nucleus	41.15	47.17
EES14345	Sorghum	nucleus	41.98	46.15
Os08t0101100-01	Rice	nucleus	38.27	45.81
TraesCS7B01G230000.1	Wheat	nucleus	37.86	42.79
TraesCS7A01G329300.1	Wheat	nucleus	37.86	42.59
TraesCS7D01G326200.1	Wheat	nucleus	37.86	42.59
PGSC0003DMT400003983	Potato	extracellular, nucleus	20.16	34.75
PGSC0003DMT400021917	Potato	nucleus	23.87	33.14
CDX80362	Canola	nucleus	20.58	30.86
Bra009681.1-P	Field mustard	nucleus	19.75	30.19
PGSC0003DMT400048091	Potato	nucleus	19.75	30.0
HORVU7Hr1G078760.8	Barley	nucleus, plastid	33.74	28.28
CDX88025	Canola	nucleus	20.16	26.63
PGSC0003DMT400043013	Potato	nucleus	23.05	24.03

Protein Annotations

Gene3D:1.10.30.10	EntrezGene:102599000	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:HMG_box_dom
InterPro:HMG_box_dom_sf	InterPro:IPR009071	InterPro:IPR036910	UniProt:M1CDE7	PFAM:PF00505	EnsemblPlantsGene:PGSC0003DMG400025304
PGSC:PGSC0003DMG400025304	EnsemblPlants:PGSC0003DMT400065103	PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF147	SMART:SM00398
SUPFAM:SSF47095	UniParc:UPI000295F6FF	RefSeq:XP_006360847.1	SEG:seg	:	:

Description

DNA-binding protein MNB1B [Source:PGSC_GENE;Acc:PGSC0003DMG400025304]

Coordinates

chr4:+:3943426..3945740

Molecular Weight (calculated)

26873.6 Da

IEP (calculated)

5.362

GRAVY (calculated)

-0.801

Length

243 amino acids

Sequence
(BLAST)

001: MAGGGASTKA SNGGPTRVRK RVEVESAAAA ASLKRAKDGS AFARCEECSK DVPIALISFH NCSLDAKIKM NLEAQVVENQ TEVKKPAAKS REKSTEPKAK
101: REKKPKNPNA PKRPPTAFFV FMDDFRQEFK AANPDCKSVS TVAKEGGEKW KSMTDEEKKP YQEKAAELKA AYEKALKSNT DADNANVGSC FYANLKFSTV
201: MFTFSTLTSK LMIQDDDEEP EKEIKEEIVV DEEVKDEIEV DEE

Best Arabidopsis Sequence Match ( AT5G23420.1 )
(BLAST)

001: MAGPSTTSNA PKQRKRVEAE TSSNTSTTLR RAKDGSAFAL CEGCNKSVAV ALISMHNCSL DAKIRVNLEA QVVETQAEAK KKPAEKKKTT SDGPKPKRLK
101: KTNDEKKSSS TSNKPKRPLT AFFIFMSDFR KTFKSEHNGS LAKDAAKIGG EKWKSLTEEE KKVYLDKAAE LKAEYNKSLE SNDADEEEED EEKQSDDVDD
201: AEEKQVDDDD EVEEKEVENT DDDKKEAEGK EEEEEEILDD Y

Arabidopsis Description

HMGB7High mobility group B protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDF9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.