Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88025 | Canola | nucleus | 91.36 | 80.43 |
| CDY33643 | Canola | nucleus, plastid | 25.93 | 28.97 |
| CDY01357 | Canola | nucleus, plastid | 24.69 | 28.37 |
| CDX96626 | Canola | nucleus, plastid | 25.31 | 28.28 |
| CDY65900 | Canola | nucleus, plastid | 24.69 | 27.78 |
| CDY64875 | Canola | nucleus | 40.74 | 27.5 |
| CDY16851 | Canola | nucleus | 40.74 | 27.5 |
| CDY29512 | Canola | nucleus, plastid | 22.84 | 27.01 |
| CDY26814 | Canola | nucleus | 21.6 | 26.92 |
| CDY64458 | Canola | nucleus | 22.22 | 26.28 |
| CDY46957 | Canola | nucleus | 38.89 | 25.93 |
| CDY24349 | Canola | nucleus | 21.6 | 25.55 |
| AT5G23420.1 | Thale cress | nucleus, plastid | 37.65 | 25.31 |
| CDY40795 | Canola | nucleus | 38.89 | 25.3 |
| CDY31871 | Canola | plastid | 25.31 | 25.15 |
| CDY30359 | Canola | nucleus | 20.99 | 25.0 |
| KRH36171 | Soybean | nucleus | 30.25 | 24.5 |
| KRG90584 | Soybean | cytosol, nucleus, plastid | 31.48 | 24.4 |
| CDX69149 | Canola | nucleus | 20.99 | 24.11 |
| CDX75512 | Canola | nucleus | 20.99 | 24.11 |
| CDX78045 | Canola | nucleus | 25.93 | 23.86 |
| CDX90629 | Canola | nucleus | 25.31 | 23.84 |
| Os08t0101100-01 | Rice | nucleus | 29.63 | 23.65 |
| CDY29051 | Canola | nucleus | 25.31 | 23.43 |
| Solyc04g008820.2.1 | Tomato | nucleus | 30.86 | 23.26 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.4 | 23.12 |
| Zm00001d052749_P001 | Maize | nucleus | 28.4 | 21.7 |
| VIT_10s0071g00870.t01 | Wine grape | nucleus | 30.86 | 20.92 |
| TraesCS7A01G329300.1 | Wheat | nucleus | 27.78 | 20.83 |
| TraesCS7D01G326200.1 | Wheat | nucleus | 27.78 | 20.83 |
| PGSC0003DMT400065103 | Potato | nucleus | 30.86 | 20.58 |
| TraesCS7B01G230000.1 | Wheat | nucleus | 27.16 | 20.47 |
| EES14345 | Sorghum | nucleus | 27.16 | 19.91 |
| KRH75844 | Soybean | cytosol | 12.35 | 17.54 |
| CDX72548 | Canola | plastid | 22.22 | 17.48 |
| CDY40620 | Canola | nucleus, plastid | 22.22 | 17.48 |
| HORVU7Hr1G078760.8 | Barley | nucleus, plastid | 24.69 | 13.79 |
Protein Annotations
| EnsemblPlants:CDX80362 | EnsemblPlantsGene:GSBRNA2T00133424001 | Gene3D:1.10.30.10 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 |
| InterPro:IPR036910 | ncoils:Coil | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF147 | PFAM:PF00505 | PFscan:PS50118 |
| ProteinID:CDX80362 | ProteinID:CDX80362.1 | SEG:seg | SMART:SM00398 | SUPFAM:SSF47095 | UniParc:UPI0004EE5062 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC07g30820D
Coordinates
chrLK031821:-:38062..40566
Molecular Weight (calculated)
18530.7 Da
IEP (calculated)
7.904
GRAVY (calculated)
-1.091
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MTNSNNTLLR PKFVSAFAIC EGCNEKVTVK YKYMHKCNLD AKIGTEAKKK PPTAFYFFMN DFRETYEEEN RYVNLKDVPK LGGEMWKSFT EDEKNVYRDK
101: AAQLMEEYNK SLESDDADDV EDEEKEVDNK GDAPNGCRNG RGRGRGRGRL VRGGRGRPSA FG
101: AAQLMEEYNK SLESDDADDV EDEEKEVDNK GDAPNGCRNG RGRGRGRGRL VRGGRGRPSA FG
001: MAGPSTTSNA PKQRKRVEAE TSSNTSTTLR RAKDGSAFAL CEGCNKSVAV ALISMHNCSL DAKIRVNLEA QVVETQAEAK KKPAEKKKTT SDGPKPKRLK
101: KTNDEKKSSS TSNKPKRPLT AFFIFMSDFR KTFKSEHNGS LAKDAAKIGG EKWKSLTEEE KKVYLDKAAE LKAEYNKSLE SNDADEEEED EEKQSDDVDD
201: AEEKQVDDDD EVEEKEVENT DDDKKEAEGK EEEEEEILDD Y
101: KTNDEKKSSS TSNKPKRPLT AFFIFMSDFR KTFKSEHNGS LAKDAAKIGG EKWKSLTEEE KKVYLDKAAE LKAEYNKSLE SNDADEEEED EEKQSDDVDD
201: AEEKQVDDDD EVEEKEVENT DDDKKEAEGK EEEEEEILDD Y
Arabidopsis Description
HMGB7High mobility group B protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDF9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.