Factsheet for Os08t0101100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052749_P001	Maize	nucleus	67.0	64.15
EES14345	Sorghum	nucleus	66.01	60.63
TraesCS7D01G326200.1	Wheat	nucleus	61.58	57.87
TraesCS7A01G329300.1	Wheat	nucleus	61.58	57.87
TraesCS7B01G230000.1	Wheat	nucleus	60.1	56.74
GSMUA_AchrUn_...	Banana	nucleus	46.8	47.74
Solyc04g008820.2.1	Tomato	nucleus	46.31	43.72
KRH36171	Soybean	nucleus	42.86	43.5
KRG90584	Soybean	cytosol, nucleus, plastid	43.35	42.11
VIT_10s0071g00870.t01	Wine grape	nucleus	48.77	41.42
AT5G23420.1	Thale cress	nucleus, plastid	48.28	40.66
CDY64875	Canola	nucleus	47.78	40.42
KRH75844	Soybean	cytosol	22.66	40.35
CDY16851	Canola	nucleus	46.31	39.17
CDY46957	Canola	nucleus	46.8	39.09
CDY40795	Canola	nucleus	47.78	38.96
Bra029371.1-P	Field mustard	nucleus	46.31	38.68
Os02t0670400-01	Rice	nucleus	27.59	38.62
Bra026498.1-P	Field mustard	nucleus	46.8	38.62
PGSC0003DMT400065103	Potato	nucleus	45.81	38.27
Os09t0551600-01	Rice	nucleus	23.15	37.01
Os06t0728000-02	Rice	nucleus	28.08	36.31
HORVU7Hr1G078760.8	Barley	nucleus, plastid	51.72	36.21
Os01t0666200-01	Rice	nucleus	21.18	32.33
Os04t0564600-01	Rice	nucleus	20.2	31.06
CDX80362	Canola	nucleus	23.65	29.63
Bra009681.1-P	Field mustard	nucleus	22.66	28.93
CDX88025	Canola	nucleus	23.15	25.54

Protein Annotations

Gene3D:1.10.30.10	MapMan:35.1	EntrezGene:4344416	EMBL:AK069900	ProteinID:BAD03552.1	ProteinID:BAF22672.1
ProteinID:BAT03401.1	ProteinID:EAZ41214.1	EMBL:EU847018	GO:GO:0000741	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0007275	GO:GO:0008150	GO:GO:0009987	GO:GO:0010197	GO:GO:0016043	GO:GO:0030154
InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf	InterPro:IPR009071	InterPro:IPR036910	EnsemblPlantsGene:Os08g0101100	EnsemblPlants:Os08t0101100-01
PFAM:PF00505	PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF147	UniProt:Q6Z1Z2	SMART:SM00398
SUPFAM:SSF47095	UniParc:UPI0000226151	RefSeq:XP_015649006.1	SEG:seg	:	:

Description

High mobility group protein B, High mobility group subgroup B proteinHigh mobility group, HMG1/HMG2 domain containing protein. (Os08t0101100-01)

Coordinates

chr8:-:71348..72715

Molecular Weight (calculated)

22327.6 Da

IEP (calculated)

4.819

GRAVY (calculated)

-1.146

Length

203 amino acids

Sequence
(BLAST)

001: MAGKSGARTR KRVEATDSAV LKRARDGSAF TRCEACGKSV SVVLIDMHNC SLDDKIRISL EAQVVEQAVE VAASKKKSGK NNNNNGEGAK KGKRPPTAFF
101: LFMSDFRKEY KAEHPDNKSV SAVAKEGGER WKSMSDEDKK PYLDKAAELK AEYHNGERSD ENNVGGNAGE QEVDQPPKKG TDEDDQEDED GAEEEKNELD
201: DDI

Best Arabidopsis Sequence Match ( AT5G23420.1 )
(BLAST)

001: MAGPSTTSNA PKQRKRVEAE TSSNTSTTLR RAKDGSAFAL CEGCNKSVAV ALISMHNCSL DAKIRVNLEA QVVETQAEAK KKPAEKKKTT SDGPKPKRLK
101: KTNDEKKSSS TSNKPKRPLT AFFIFMSDFR KTFKSEHNGS LAKDAAKIGG EKWKSLTEEE KKVYLDKAAE LKAEYNKSLE SNDADEEEED EEKQSDDVDD
201: AEEKQVDDDD EVEEKEVENT DDDKKEAEGK EEEEEEILDD Y

Arabidopsis Description

HMGB7High mobility group B protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDF9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.