CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75844	Soybean	cytosol	52.15	95.61
KRH36171	Soybean	nucleus	91.39	95.5
GSMUA_AchrUn_...	Banana	nucleus	55.98	58.79
Solyc04g008820.2.1	Tomato	nucleus	54.07	52.56
VIT_10s0071g00870.t01	Wine grape	nucleus	58.85	51.46
CDY16851	Canola	nucleus	57.42	50.0
Bra026498.1-P	Field mustard	nucleus	56.94	48.37
CDY64875	Canola	nucleus	55.5	48.33
Bra029371.1-P	Field mustard	nucleus	55.02	47.33
CDY46957	Canola	nucleus	55.02	47.33
PGSC0003DMT400065103	Potato	nucleus	55.02	47.33
AT5G23420.1	Thale cress	nucleus, plastid	53.11	46.06
CDY40795	Canola	nucleus	54.55	45.78
Zm00001d052749_P001	Maize	nucleus	44.5	43.87
Os08t0101100-01	Rice	nucleus	42.11	43.35
TraesCS7B01G230000.1	Wheat	nucleus	43.06	41.86
TraesCS7A01G329300.1	Wheat	nucleus	43.06	41.67
TraesCS7D01G326200.1	Wheat	nucleus	43.06	41.67
EES14345	Sorghum	nucleus	43.54	41.18
KRH75875	Soybean	nucleus	31.1	38.46
KRH51597	Soybean	nucleus	28.71	38.22
KRH65770	Soybean	nucleus	30.14	37.95
KRH07880	Soybean	nucleus	24.4	36.69
KRH39434	Soybean	nucleus	24.4	35.92
KRH42324	Soybean	plastid	25.36	35.81
KRH60915	Soybean	nucleus	30.62	35.36
KRH58452	Soybean	nucleus, plastid	24.88	34.67
CDX80362	Canola	nucleus	24.4	31.48
Bra009681.1-P	Field mustard	nucleus	23.92	31.45
HORVU7Hr1G078760.8	Barley	nucleus, plastid	39.23	28.28
CDX88025	Canola	nucleus	23.45	26.63
KRH58451	Soybean	extracellular	16.27	24.11

Protein Annotations

Gene3D:1.10.30.10	EntrezGene:100306558	MapMan:35.1	EMBL:ACUP02012626	EMBL:BT090712	UniProt:C6SZV9
ncoils:Coil	EnsemblPlantsGene:GLYMA_20G100600	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf
InterPro:IPR009071	InterPro:IPR036910	EnsemblPlants:KRG90584	ProteinID:KRG90584	ProteinID:KRG90584.1	PFAM:PF00505
PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF147	SMART:SM00398	SUPFAM:SSF47095	UniParc:UPI0001B151A8
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:34389820..34391662

Molecular Weight (calculated)

23450.6 Da

IEP (calculated)

5.629

GRAVY (calculated)

-1.024

Length

209 amino acids

Sequence
(BLAST)

001: MASSQSRKRV DAVDSRAASV LVRAKDGSAF ARCDDCKKNV PVALIDMHSC SLEAKIKMNL DAQVVEQAAE AKKPERKKPK SKEPMAKKAK VGKGKKVKDP
101: NMPKRPPTAF FVFLDDFRKS FKEANPDSKD VKRVGKEAGE KWRSMTDEEK KPYLDKVAEL KEEYEKAMES YEAGQDEEDQ TVSDKETSDK EAAAKEVAIE
201: VEEELTDED

Best Arabidopsis Sequence Match ( AT5G23420.1 )
(BLAST)

001: MAGPSTTSNA PKQRKRVEAE TSSNTSTTLR RAKDGSAFAL CEGCNKSVAV ALISMHNCSL DAKIRVNLEA QVVETQAEAK KKPAEKKKTT SDGPKPKRLK
101: KTNDEKKSSS TSNKPKRPLT AFFIFMSDFR KTFKSEHNGS LAKDAAKIGG EKWKSLTEEE KKVYLDKAAE LKAEYNKSLE SNDADEEEED EEKQSDDVDD
201: AEEKQVDDDD EVEEKEVENT DDDKKEAEGK EEEEEEILDD Y

Arabidopsis Description

HMGB7High mobility group B protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDF9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.