Factsheet for Bra009681.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88025	Canola	nucleus	97.48	84.24
Bra025838.1-P	Field mustard	nucleus, plastid	22.64	26.28
Bra026498.1-P	Field mustard	nucleus	40.25	26.02
Bra029371.1-P	Field mustard	nucleus	38.99	25.51
Bra021911.1-P	Field mustard	nucleus	23.9	25.17
AT5G23420.1	Thale cress	nucleus, plastid	36.48	24.07
KRH36171	Soybean	nucleus	30.19	24.0
KRG90584	Soybean	cytosol, nucleus, plastid	31.45	23.92
Bra011624.1-P	Field mustard	nucleus	20.75	23.4
Os08t0101100-01	Rice	nucleus	28.93	22.66
GSMUA_AchrUn_...	Banana	nucleus	28.3	22.61
Solyc04g008820.2.1	Tomato	nucleus	30.19	22.33
Bra002073.1-P	Field mustard	nucleus	22.01	22.29
VIT_10s0071g00870.t01	Wine grape	nucleus	32.08	21.34
TraesCS7A01G329300.1	Wheat	nucleus	28.3	20.83
TraesCS7D01G326200.1	Wheat	nucleus	28.3	20.83
Zm00001d052749_P001	Maize	nucleus	27.67	20.75
TraesCS7B01G230000.1	Wheat	nucleus	27.67	20.47
Bra012244.1-P	Field mustard	nucleus, plastid	12.58	20.2
PGSC0003DMT400065103	Potato	nucleus	30.19	19.75
EES14345	Sorghum	nucleus	27.04	19.46
Bra012832.1-P	Field mustard	nucleus	18.24	18.24
KRH75844	Soybean	cytosol	11.95	16.67
Bra017723.1-P	Field mustard	nucleus, plastid	21.38	16.04
Bra037266.1-P	Field mustard	endoplasmic reticulum, vacuole	22.01	14.58
HORVU7Hr1G078760.8	Barley	nucleus, plastid	25.16	13.79

Protein Annotations

Gene3D:1.10.30.10	MapMan:35.1	EnsemblPlantsGene:Bra009681	EnsemblPlants:Bra009681.1	EnsemblPlants:Bra009681.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf	InterPro:IPR009071	InterPro:IPR036910
UniProt:M4CZN4	PFAM:PF00505	PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF147	SMART:SM00398
SUPFAM:SSF47095	UniParc:UPI000253F091	SEG:seg	:	:	:

Description

AT5G23420 (E=6e-017) HMGB6 | HMGB6; transcription factor

Coordinates

chrA06:-:16515972..16516967

Molecular Weight (calculated)

18241.4 Da

IEP (calculated)

8.296

GRAVY (calculated)

-1.059

Length

159 amino acids

Sequence
(BLAST)

001: MTNTLLRPKF VSAFAICEGC NEKVTVKYRR MHKCSLDAAK IGTEAKKKPP TAFYFFMNDF RETYEEKNQY VNLKDVPKLG GEMWKSFTED EKNVYRDKAA
101: QLMEEYNKSL ESNDADDVEE DEEKEVDNKT DAPNGCQNGR GRGRGRLVRG GRGRRSAFG

Best Arabidopsis Sequence Match ( AT5G23420.1 )
(BLAST)

001: MAGPSTTSNA PKQRKRVEAE TSSNTSTTLR RAKDGSAFAL CEGCNKSVAV ALISMHNCSL DAKIRVNLEA QVVETQAEAK KKPAEKKKTT SDGPKPKRLK
101: KTNDEKKSSS TSNKPKRPLT AFFIFMSDFR KTFKSEHNGS LAKDAAKIGG EKWKSLTEEE KKVYLDKAAE LKAEYNKSLE SNDADEEEED EEKQSDDVDD
201: AEEKQVDDDD EVEEKEVENT DDDKKEAEGK EEEEEEILDD Y

Arabidopsis Description

HMGB7High mobility group B protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDF9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.