Factsheet for GSMUA_AchrUn_randomP05290_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75844	Soybean	cytosol	32.66	57.02
KRH36171	Soybean	nucleus	56.78	56.5
KRG90584	Soybean	cytosol, nucleus, plastid	58.79	55.98
Solyc04g008820.2.1	Tomato	nucleus	54.77	50.7
VIT_10s0071g00870.t01	Wine grape	nucleus	60.8	50.63
Zm00001d052749_P001	Maize	nucleus	52.26	49.06
CDY16851	Canola	nucleus	57.29	47.5
Bra026498.1-P	Field mustard	nucleus	58.29	47.15
CDY46957	Canola	nucleus	57.29	46.91
Os08t0101100-01	Rice	nucleus	47.74	46.8
CDY64875	Canola	nucleus	56.28	46.67
Bra029371.1-P	Field mustard	nucleus	56.78	46.5
PGSC0003DMT400065103	Potato	nucleus	56.28	46.09
TraesCS7B01G230000.1	Wheat	nucleus	49.75	46.05
TraesCS7A01G329300.1	Wheat	nucleus	49.75	45.83
TraesCS7D01G326200.1	Wheat	nucleus	49.75	45.83
EES14345	Sorghum	nucleus	50.75	45.7
CDY40795	Canola	nucleus	56.78	45.38
AT5G23420.1	Thale cress	nucleus, plastid	54.27	44.81
GSMUA_AchrUn_...	Banana	nucleus	30.65	43.26
GSMUA_Achr11P...	Banana	nucleus	29.15	38.16
GSMUA_Achr9P21200_001	Banana	nucleus	29.15	37.66
GSMUA_Achr2P03630_001	Banana	nucleus	28.64	37.01
GSMUA_Achr10P...	Banana	nucleus	28.64	37.01
GSMUA_Achr4P15000_001	Banana	nucleus	21.11	36.52
GSMUA_Achr4P07950_001	Banana	nucleus	23.12	35.38
GSMUA_Achr5P11630_001	Banana	nucleus	26.63	33.54
GSMUA_Achr2P11060_001	Banana	nucleus	25.63	33.12
GSMUA_Achr4P25860_001	Banana	nucleus	28.14	30.6
CDX80362	Canola	nucleus	23.12	28.4
Bra009681.1-P	Field mustard	nucleus	22.61	28.3
HORVU7Hr1G078760.8	Barley	nucleus, plastid	41.21	28.28
CDX88025	Canola	nucleus	22.11	23.91

Protein Annotations

Gene3D:1.10.30.10	MapMan:35.1	ncoils:Coil	GO:GO:0000741	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0007275	GO:GO:0008150	GO:GO:0009987	GO:GO:0010197	GO:GO:0016043	GO:GO:0030154
EnsemblPlantsGene:GSMUA_AchrUn_randomG05290_001	EnsemblPlants:GSMUA_AchrUn_randomP05290_001	EnsemblPlants:GSMUA_AchrUn_randomT05290_001	InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf	InterPro:IPR009071
InterPro:IPR036910	UniProt:M0U6J1	PFAM:PF00505	PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF147
SMART:SM00398	SUPFAM:SSF47095	UniParc:UPI00029510E4	SEG:seg	:	:

Description

HMG1/2, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG05290_001]

Coordinates

chrchrUn_random:+:20732261..20733655

Molecular Weight (calculated)

22521.4 Da

IEP (calculated)

8.040

GRAVY (calculated)

-1.208

Length

199 amino acids

Sequence
(BLAST)

001: MGRSSSRSNP PRPRKRVEAE TASTLKRARD GSAFTRCEAC KKDVAVVLID MHSCSLDSKI RMTLESQVVE KAVEAKKPVE KKRAVSSEGK ERKAKKGKKS
101: KDSSAPKRPA TAFFLFMEDF RKTFKEANPD NKSVAVVSKE GGEKWKTMSD EEKKPYIERA AELKEEYAKA VEKHDQEDEE EEKEGSSKEE EEVEEENEA

Best Arabidopsis Sequence Match ( AT5G23420.1 )
(BLAST)

001: MAGPSTTSNA PKQRKRVEAE TSSNTSTTLR RAKDGSAFAL CEGCNKSVAV ALISMHNCSL DAKIRVNLEA QVVETQAEAK KKPAEKKKTT SDGPKPKRLK
101: KTNDEKKSSS TSNKPKRPLT AFFIFMSDFR KTFKSEHNGS LAKDAAKIGG EKWKSLTEEE KKVYLDKAAE LKAEYNKSLE SNDADEEEED EEKQSDDVDD
201: AEEKQVDDDD EVEEKEVENT DDDKKEAEGK EEEEEEILDD Y

Arabidopsis Description

HMGB7High mobility group B protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDF9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.