Factsheet for HORVU7Hr1G078760.8

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G329300.1	Wheat	nucleus	63.1	84.72
TraesCS7D01G326200.1	Wheat	nucleus	62.76	84.26
TraesCS7B01G230000.1	Wheat	nucleus	61.03	82.33
Zm00001d052749_P001	Maize	nucleus	38.28	52.36
Os08t0101100-01	Rice	nucleus	36.21	51.72
EES14345	Sorghum	nucleus	38.97	51.13
GSMUA_AchrUn_...	Banana	nucleus	28.28	41.21
KRH36171	Soybean	nucleus	27.59	40.0
KRG90584	Soybean	cytosol, nucleus, plastid	28.28	39.23
Solyc04g008820.2.1	Tomato	nucleus	28.62	38.6
CDY16851	Canola	nucleus	28.62	34.58
CDY64875	Canola	nucleus	28.62	34.58
HORVU2Hr1G095890.3	Barley	nucleus, plastid	15.17	34.38
VIT_10s0071g00870.t01	Wine grape	nucleus	28.28	34.31
KRH75844	Soybean	cytosol	13.45	34.21
CDY46957	Canola	nucleus	28.28	33.74
Bra029371.1-P	Field mustard	nucleus	28.28	33.74
PGSC0003DMT400065103	Potato	nucleus	28.28	33.74
Bra026498.1-P	Field mustard	nucleus	28.62	33.74
AT5G23420.1	Thale cress	nucleus, plastid	27.93	33.61
CDY40795	Canola	nucleus	27.59	32.13
HORVU3Hr1G060620.1	Barley	nucleus	13.1	29.01
HORVU6Hr1G064720.1	Barley	nucleus, plastid	21.72	28.0
Bra009681.1-P	Field mustard	nucleus	13.79	25.16
CDX80362	Canola	nucleus	13.79	24.69
CDX88025	Canola	nucleus	14.83	23.37
HORVU7Hr1G121390.1	Barley	nucleus, plastid	17.59	22.87
HORVU5Hr1G087340.1	Barley	mitochondrion	15.17	18.18
HORVU4Hr1G000120.13	Barley	cytosol	13.1	13.15

Protein Annotations

Gene3D:1.10.30.10	MapMan:35.2	UniProt:A0A287X0F3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:HMG_box_dom
InterPro:HMG_box_dom_sf	EnsemblPlantsGene:HORVU7Hr1G078760	EnsemblPlants:HORVU7Hr1G078760.8	InterPro:IPR009071	InterPro:IPR036910	PFAM:PF00505
PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF147	SMART:SM00398	SUPFAM:SSF47095	UniParc:UPI000B472696
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr7H:-:462878998..462880355

Molecular Weight (calculated)

32161.8 Da

IEP (calculated)

6.201

GRAVY (calculated)

-0.894

Length

290 amino acids

Sequence
(BLAST)

001: APPRPPLLFI PSKSPFPPAA RNQDPITSPP LLPSSKRDPA RSVQFHGDRR QRSPLPQARR GYRPQARARR KRLHPLVISP PLSLLLLRSF SDERLSDSLV
101: WLVGFSEACN KDVAIVLIDL HSCSLDSKIR LSLESQVVEK AVEVQEKKRK APPAAAGGKG KKKSKADGDG AKKAKAKRPP TAFFLFMKDF RVEFKTSHPD
201: EKGVAAVGKA AGEKWRSMTE EEKKPYNDQA KELKAQLDNG EGSAENNVGD EEKADADAEE VDDADLEVDK QEDAPEDEEE EEKNELDDDI

Best Arabidopsis Sequence Match ( AT5G23420.1 )
(BLAST)

001: MAGPSTTSNA PKQRKRVEAE TSSNTSTTLR RAKDGSAFAL CEGCNKSVAV ALISMHNCSL DAKIRVNLEA QVVETQAEAK KKPAEKKKTT SDGPKPKRLK
101: KTNDEKKSSS TSNKPKRPLT AFFIFMSDFR KTFKSEHNGS LAKDAAKIGG EKWKSLTEEE KKVYLDKAAE LKAEYNKSLE SNDADEEEED EEKQSDDVDD
201: AEEKQVDDDD EVEEKEVENT DDDKKEAEGK EEEEEEILDD Y

Arabidopsis Description

HMGB7High mobility group B protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDF9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.