Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029371.1-P | Field mustard | nucleus | 99.18 | 99.18 |
| CDY40795 | Canola | nucleus | 94.65 | 92.37 |
| CDY64875 | Canola | nucleus | 83.95 | 85.0 |
| CDY16851 | Canola | nucleus | 83.13 | 84.17 |
| AT5G23420.1 | Thale cress | nucleus, plastid | 76.54 | 77.18 |
| KRH75844 | Soybean | cytosol | 27.16 | 57.89 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.91 | 57.29 |
| Solyc04g008820.2.1 | Tomato | nucleus | 50.62 | 57.21 |
| KRH36171 | Soybean | nucleus | 46.91 | 57.0 |
| KRG90584 | Soybean | cytosol, nucleus, plastid | 47.33 | 55.02 |
| PGSC0003DMT400065103 | Potato | nucleus | 51.03 | 51.03 |
| VIT_10s0071g00870.t01 | Wine grape | nucleus | 48.15 | 48.95 |
| Os08t0101100-01 | Rice | nucleus | 39.09 | 46.8 |
| Zm00001d052749_P001 | Maize | nucleus | 38.68 | 44.34 |
| CDY64458 | Canola | nucleus | 24.69 | 43.8 |
| CDY24349 | Canola | nucleus | 24.69 | 43.8 |
| TraesCS7B01G230000.1 | Wheat | nucleus | 38.68 | 43.72 |
| CDY30359 | Canola | nucleus | 24.28 | 43.38 |
| TraesCS7D01G326200.1 | Wheat | nucleus | 38.27 | 43.06 |
| TraesCS7A01G329300.1 | Wheat | nucleus | 38.27 | 43.06 |
| EES14345 | Sorghum | nucleus | 38.27 | 42.08 |
| CDY01357 | Canola | nucleus, plastid | 24.28 | 41.84 |
| CDY33643 | Canola | nucleus, plastid | 24.69 | 41.38 |
| CDY65900 | Canola | nucleus, plastid | 24.28 | 40.97 |
| CDY26814 | Canola | nucleus | 21.81 | 40.77 |
| CDX96626 | Canola | nucleus, plastid | 24.28 | 40.69 |
| CDX80362 | Canola | nucleus | 25.93 | 38.89 |
| CDY29512 | Canola | nucleus, plastid | 21.81 | 38.69 |
| CDX69149 | Canola | nucleus | 22.22 | 38.3 |
| CDX75512 | Canola | nucleus | 22.22 | 38.3 |
| CDY31871 | Canola | plastid | 23.87 | 35.58 |
| CDX88025 | Canola | nucleus | 25.93 | 34.24 |
| CDX78045 | Canola | nucleus | 23.46 | 32.39 |
| CDY29051 | Canola | nucleus | 23.05 | 32.0 |
| CDX90629 | Canola | nucleus | 21.81 | 30.81 |
| HORVU7Hr1G078760.8 | Barley | nucleus, plastid | 33.74 | 28.28 |
| CDY40620 | Canola | nucleus, plastid | 21.81 | 25.73 |
| CDX72548 | Canola | plastid | 21.81 | 25.73 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | UniProt:A0A078I9Y1 | EnsemblPlants:CDY46957 | ProteinID:CDY46957 | ProteinID:CDY46957.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00086438001 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf |
| InterPro:IPR009071 | InterPro:IPR036910 | PFAM:PF00505 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF147 |
| SMART:SM00398 | SUPFAM:SSF47095 | UniParc:UPI0004EE0271 | SEG:seg | : | : |
Description
BnaA02g32890DBnaA02g32890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I9Y1]
Coordinates
chrLK032692:-:73271..75394
Molecular Weight (calculated)
27160.1 Da
IEP (calculated)
4.773
GRAVY (calculated)
-1.323
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGRGSSKS TAPKPRKRVE AESKPETTNN NNINTLLRAK DGSAFAKCEG CNKNVAVALI SMHNCSLDAK IRVNLEAQVV ETQTEAKKKP VERKKSTSDE
101: PKAKRLRKAK DDSKKKSSSS SNKPKRPLTA FFIFMADFRK TFKEENPDAG VKDVAKQGGE KWKSLDEEEK KVYLDKAAEL KAEYNKSLES SNDADEEEAD
201: DADEKQSDEA EEKQADDEET EENEAEKKEA EGKEEEDEIL DDY
101: PKAKRLRKAK DDSKKKSSSS SNKPKRPLTA FFIFMADFRK TFKEENPDAG VKDVAKQGGE KWKSLDEEEK KVYLDKAAEL KAEYNKSLES SNDADEEEAD
201: DADEKQSDEA EEKQADDEET EENEAEKKEA EGKEEEDEIL DDY
001: MAGPSTTSNA PKQRKRVEAE TSSNTSTTLR RAKDGSAFAL CEGCNKSVAV ALISMHNCSL DAKIRVNLEA QVVETQAEAK KKPAEKKKTT SDGPKPKRLK
101: KTNDEKKSSS TSNKPKRPLT AFFIFMSDFR KTFKSEHNGS LAKDAAKIGG EKWKSLTEEE KKVYLDKAAE LKAEYNKSLE SNDADEEEED EEKQSDDVDD
201: AEEKQVDDDD EVEEKEVENT DDDKKEAEGK EEEEEEILDD Y
101: KTNDEKKSSS TSNKPKRPLT AFFIFMSDFR KTFKSEHNGS LAKDAAKIGG EKWKSLTEEE KKVYLDKAAE LKAEYNKSLE SNDADEEEED EEKQSDDVDD
201: AEEKQVDDDD EVEEKEVENT DDDKKEAEGK EEEEEEILDD Y
Arabidopsis Description
HMGB7High mobility group B protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDF9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.