Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90629 | Canola | nucleus | 78.98 | 80.81 |
| CDY29051 | Canola | nucleus | 80.11 | 80.57 |
| AT3G51880.2 | Thale cress | nucleus | 81.82 | 77.84 |
| KRH65770 | Soybean | nucleus | 63.64 | 67.47 |
| KRH75875 | Soybean | nucleus | 64.77 | 67.46 |
| VIT_08s0007g02200.t01 | Wine grape | nucleus | 60.23 | 63.1 |
| PGSC0003DMT400021917 | Potato | nucleus | 60.8 | 61.14 |
| CDY29512 | Canola | nucleus, plastid | 46.59 | 59.85 |
| CDX96626 | Canola | nucleus, plastid | 48.86 | 59.31 |
| CDY33643 | Canola | nucleus, plastid | 48.86 | 59.31 |
| CDY65900 | Canola | nucleus, plastid | 48.3 | 59.03 |
| CDY01357 | Canola | nucleus, plastid | 45.45 | 56.74 |
| CDY64458 | Canola | nucleus | 39.2 | 50.37 |
| CDX69149 | Canola | nucleus | 39.77 | 49.65 |
| CDX75512 | Canola | nucleus | 39.77 | 49.65 |
| CDY24349 | Canola | nucleus | 38.64 | 49.63 |
| CDY26814 | Canola | nucleus | 36.36 | 49.23 |
| CDY30359 | Canola | nucleus | 36.93 | 47.79 |
| CDY31871 | Canola | plastid | 43.75 | 47.24 |
| CDY40620 | Canola | nucleus, plastid | 40.34 | 34.47 |
| CDX72548 | Canola | plastid | 40.34 | 34.47 |
| CDX80362 | Canola | nucleus | 23.86 | 25.93 |
| CDY64875 | Canola | nucleus | 32.39 | 23.75 |
| CDY46957 | Canola | nucleus | 32.39 | 23.46 |
| CDY40795 | Canola | nucleus | 32.95 | 23.29 |
| CDY16851 | Canola | nucleus | 31.25 | 22.92 |
| CDX88025 | Canola | nucleus | 22.73 | 21.74 |
Protein Annotations
| EnsemblPlants:CDX78045 | EnsemblPlantsGene:GSBRNA2T00129329001 | Gene3D:1.10.30.10 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 |
| InterPro:IPR036910 | ncoils:Coil | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF292 | PFAM:PF00505 | PFscan:PS50118 |
| ProteinID:CDX78045 | ProteinID:CDX78045.1 | SEG:seg | SMART:SM00398 | SUPFAM:SSF47095 | UniParc:UPI0004EECF8A |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaA09g32400D
Coordinates
chrLK031814:-:787244..788933
Molecular Weight (calculated)
19914.5 Da
IEP (calculated)
4.544
GRAVY (calculated)
-1.734
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTGKGKGKA KTTKEALKPF DDRRVGKRKA PAEKPQPSKR EKKAKKDPNK PKRAPSAFFV FLEDFRQTFK KENPDVKAVS AVGKAGGQKW KSMSQAEKAP
101: YEEKAAKRKA EYEKQMDAYN KSLEEGSDES ENSLSEVNDE DEASEEEEKV EKGKAGEDED DDDDDEEDEE DDEEED
101: YEEKAAKRKA EYEKQMDAYN KSLEEGSDES ENSLSEVNDE DEASEEEEKV EKGKAGEDED DDDDDEEDEE DDEEED
001: MKTAKGKDKV KTTKEALKPV DDRKVGKRKA PAEKPTKRET RKEKKAKKDP NKPKRAPSAF FVFLEDFRVT FKKENPNVKA VSAVGKAGGQ KWKSMSQAEK
101: APYEEKAAKR KAEYEKQMDA YNKNLEEGSD ESEKSRSEIN DEDEASGEVT IPLSNEELLE KEAAGDDEEE EEEEDDDDDD DEEED
101: APYEEKAAKR KAEYEKQMDA YNKNLEEGSD ESEKSRSEIN DEDEASGEVT IPLSNEELLE KEAAGDDEEE EEEEDDDDDD DEEED
Arabidopsis Description
HMGB1high mobility group B1 [Source:TAIR;Acc:AT3G51880]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.