Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH75875 | Soybean | nucleus | 94.58 | 92.9 |
| VIT_08s0007g02200.t01 | Wine grape | nucleus | 74.7 | 73.81 |
| PGSC0003DMT400021917 | Potato | nucleus | 70.48 | 66.86 |
| CDY29051 | Canola | nucleus | 68.07 | 64.57 |
| CDX90629 | Canola | nucleus | 66.87 | 64.53 |
| CDX78045 | Canola | nucleus | 67.47 | 63.64 |
| AT3G51880.2 | Thale cress | nucleus | 69.28 | 62.16 |
| Bra012832.1-P | Field mustard | nucleus | 56.63 | 59.12 |
| KRH07880 | Soybean | nucleus | 49.4 | 58.99 |
| KRH39434 | Soybean | nucleus | 50.0 | 58.45 |
| KRH51597 | Soybean | nucleus | 51.2 | 54.14 |
| KRH60915 | Soybean | nucleus | 53.61 | 49.17 |
| KRH42324 | Soybean | plastid | 28.92 | 32.43 |
| KRH58452 | Soybean | nucleus, plastid | 28.92 | 32.0 |
| KRH36171 | Soybean | nucleus | 36.75 | 30.5 |
| KRG90584 | Soybean | cytosol, nucleus, plastid | 37.95 | 30.14 |
| KRH58451 | Soybean | extracellular | 22.89 | 26.95 |
| KRH75844 | Soybean | cytosol | 15.06 | 21.93 |
Protein Annotations
| Gene3D:1.10.30.10 | EntrezGene:100499704 | MapMan:35.2 | UniProt:A0A0R0KFD0 | EMBL:ACUP02001499 | EnsemblPlantsGene:GLYMA_03G060200 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 | InterPro:IPR036910 |
| EnsemblPlants:KRH65770 | ProteinID:KRH65770 | ProteinID:KRH65770.1 | ProteinID:KRH65771.1 | ProteinID:KRH65772.1 | ProteinID:KRH65773.1 |
| PFAM:PF00505 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF292 | SMART:SM00398 | SUPFAM:SSF47095 |
| UniParc:UPI0001E7A3E7 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:8752562..8755684
Molecular Weight (calculated)
18372.0 Da
IEP (calculated)
5.633
GRAVY (calculated)
-1.530
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNAKGKGAA RASKESLKPV DDRKVGKRKA SGKPGRSSAP KKEKKAKKDP NKPKRPPSAF FVFLEEFRKT FKAENPNVKA VSVVGKAGGE KWKSLSSAEK
101: APYEAKAAKR KAEYEKLIKA YDKKQASSAD DEESDKSKSE VNDEDDASGE EEEEDDEEEE DDEDDD
101: APYEAKAAKR KAEYEKLIKA YDKKQASSAD DEESDKSKSE VNDEDDASGE EEEEDDEEEE DDEDDD
001: MKTAKGKDKV KTTKEALKPV DDRKVGKRKA PAEKPTKRET RKEKKAKKDP NKPKRAPSAF FVFLEDFRVT FKKENPNVKA VSAVGKAGGQ KWKSMSQAEK
101: APYEEKAAKR KAEYEKQMDA YNKNLEEGSD ESEKSRSEIN DEDEASGEEE LLEKEAAGDD EEEEEEEDDD DDDDEEED
101: APYEEKAAKR KAEYEKQMDA YNKNLEEGSD ESEKSRSEIN DEDEASGEEE LLEKEAAGDD EEEEEEEDDD DDDDEEED
Arabidopsis Description
HMGB1high mobility group B1 [Source:TAIR;Acc:AT3G51880]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.