CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90584	Soybean	cytosol, nucleus, plastid	95.5	91.39
KRH75844	Soybean	cytosol	52.0	91.23
GSMUA_AchrUn_...	Banana	nucleus	56.5	56.78
Solyc04g008820.2.1	Tomato	nucleus	55.5	51.63
VIT_10s0071g00870.t01	Wine grape	nucleus	61.5	51.46
CDY16851	Canola	nucleus	59.5	49.58
Bra026498.1-P	Field mustard	nucleus	59.0	47.97
CDY64875	Canola	nucleus	57.5	47.92
Bra029371.1-P	Field mustard	nucleus	57.0	46.91
CDY46957	Canola	nucleus	57.0	46.91
PGSC0003DMT400065103	Potato	nucleus	56.5	46.5
CDY40795	Canola	nucleus	56.5	45.38
AT5G23420.1	Thale cress	nucleus, plastid	54.5	45.23
Zm00001d052749_P001	Maize	nucleus	45.5	42.92
Os08t0101100-01	Rice	nucleus	43.5	42.86
TraesCS7B01G230000.1	Wheat	nucleus	44.0	40.93
TraesCS7A01G329300.1	Wheat	nucleus	44.0	40.74
TraesCS7D01G326200.1	Wheat	nucleus	44.0	40.74
EES14345	Sorghum	nucleus	44.5	40.27
KRH75875	Soybean	nucleus	31.5	37.28
KRH51597	Soybean	nucleus	29.0	36.94
KRH65770	Soybean	nucleus	30.5	36.75
KRH07880	Soybean	nucleus	25.5	36.69
KRH39434	Soybean	nucleus	25.5	35.92
KRH42324	Soybean	plastid	26.5	35.81
KRH58452	Soybean	nucleus, plastid	26.0	34.67
KRH60915	Soybean	nucleus	31.0	34.25
CDX80362	Canola	nucleus	24.5	30.25
Bra009681.1-P	Field mustard	nucleus	24.0	30.19
HORVU7Hr1G078760.8	Barley	nucleus, plastid	40.0	27.59
CDX88025	Canola	nucleus	23.5	25.54
KRH58451	Soybean	extracellular	17.5	24.82

Protein Annotations

Gene3D:1.10.30.10	EntrezGene:100810345	MapMan:35.1	EMBL:ACUP02006721	ncoils:Coil	EnsemblPlantsGene:GLYMA_10G288300
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf	UniProt:I1LFB2	InterPro:IPR009071
InterPro:IPR036910	EnsemblPlants:KRH36171	ProteinID:KRH36171	ProteinID:KRH36171.1	PFAM:PF00505	PFscan:PS50118
PANTHER:PTHR13711	PANTHER:PTHR13711:SF147	SMART:SM00398	SUPFAM:SSF47095	UniParc:UPI000233D531	SEG:seg

Description

hypothetical protein

Coordinates

chr10:+:50723793..50725628

Molecular Weight (calculated)

22433.5 Da

IEP (calculated)

7.202

GRAVY (calculated)

-1.031

Length

200 amino acids

Sequence
(BLAST)

001: MASSQSKKRV DAVDSRAASV LLRAKDGSAF ARCDDCKKNV PVALIDMHSC SLEAKIKMNL DAQVVEQAAE AKKPERKKPK SKEPMAKKAK VEKVKKVKDP
101: NMPKRPPTAF FAFLDDFRKS FKEANPDSKD VKRVGKEAGE KWRSMTDEEK KPYLDKVAEL KAEYEKAMES YEAGQDEEDQ AGSDKEAAAK EVEEELTDEE

Best Arabidopsis Sequence Match ( AT5G23420.1 )
(BLAST)

001: MAGPSTTSNA PKQRKRVEAE TSSNTSTTLR RAKDGSAFAL CEGCNKSVAV ALISMHNCSL DAKIRVNLEA QVVETQAEAK KKPAEKKKTT SDGPKPKRLK
101: KTNDEKKSSS TSNKPKRPLT AFFIFMSDFR KTFKSEHNGS LAKDAAKIGG EKWKSLTEEE KKVYLDKAAE LKAEYNKSLE SNDADEEEED EEKQSDDVDD
201: AEEKQVDDDD EVEEKEVENT DDDKKEAEGK EEEEEEILDD Y

Arabidopsis Description

HMGB7High mobility group B protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDF9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.