CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65770	Soybean	nucleus	92.9	94.58
VIT_08s0007g02200.t01	Wine grape	nucleus	72.78	73.21
CDY29051	Canola	nucleus	67.46	65.14
PGSC0003DMT400021917	Potato	nucleus	67.46	65.14
CDX90629	Canola	nucleus	66.27	65.12
CDX78045	Canola	nucleus	67.46	64.77
AT3G51880.2	Thale cress	nucleus	68.64	62.7
Bra012832.1-P	Field mustard	nucleus	56.8	60.38
KRH07880	Soybean	nucleus	46.75	56.83
KRH39434	Soybean	nucleus	47.34	56.34
KRH51597	Soybean	nucleus	49.11	52.87
KRH60915	Soybean	nucleus	51.48	48.07
KRH42324	Soybean	plastid	27.81	31.76
KRH36171	Soybean	nucleus	37.28	31.5
KRH58452	Soybean	nucleus, plastid	27.81	31.33
KRG90584	Soybean	cytosol, nucleus, plastid	38.46	31.1
KRH58451	Soybean	extracellular	21.89	26.24
KRH75844	Soybean	cytosol	14.79	21.93

Protein Annotations

Gene3D:1.10.30.10	EntrezGene:100305961	MapMan:35.2	UniProt:A0A0R0L9W1	EMBL:ACUP02000516	ncoils:Coil
EnsemblPlantsGene:GLYMA_01G116000	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf	InterPro:IPR009071
InterPro:IPR036910	EnsemblPlants:KRH75875	ProteinID:KRH75875	ProteinID:KRH75875.1	ProteinID:KRH75876.1	ProteinID:KRH75877.1
ProteinID:KRH75878.1	PFAM:PF00505	PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF292	SMART:SM00398
SUPFAM:SSF47095	UniParc:UPI000151E3C9	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:40082886..40086269

Molecular Weight (calculated)

18863.6 Da

IEP (calculated)

5.602

GRAVY (calculated)

-1.560

Length

169 amino acids

Sequence
(BLAST)

001: MKTAKGKGAA RPSKESLKPV DDRKVGKRKA SGKPEKSRAP KKEKKAKKDP NKPKRPPSAF FVFLEEFRKT FKAENPLVKA VSVVGKAGGE KWKSLSSAEK
101: APYEAKAAKR KAEYEKLIKA YEKKQASSAD DDESDKSKSE VNDEDDASGE EDHQEDEDDE EEEDDEDDD

Best Arabidopsis Sequence Match ( AT3G51880.2 )
(BLAST)

001: MKTAKGKDKV KTTKEALKPV DDRKVGKRKA PAEKPTKRET RKEKKAKKDP NKPKRAPSAF FVFLEDFRVT FKKENPNVKA VSAVGKAGGQ KWKSMSQAEK
101: APYEEKAAKR KAEYEKQMDA YNKNLEEGSD ESEKSRSEIN DEDEASGEVT IPLSNEELLE KEAAGDDEEE EEEEDDDDDD DEEED

Arabidopsis Description

HMGB1high mobility group B1 [Source:TAIR;Acc:AT3G51880]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.