Factsheet for AT3G51880.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29051	Canola	nucleus	83.78	88.57
CDX90629	Canola	nucleus	81.62	87.79
CDX78045	Canola	nucleus	77.84	81.82
Bra012832.1-P	Field mustard	nucleus	69.19	80.5
KRH65770	Soybean	nucleus	62.16	69.28
KRH75875	Soybean	nucleus	62.7	68.64
VIT_08s0007g02200.t01	Wine grape	nucleus	59.46	65.48
PGSC0003DMT400021917	Potato	nucleus	58.38	61.71
AT1G20693.1	Thale cress	nucleus, plastid	45.95	59.03
AT1G20696.2	Thale cress	nucleus, plastid	37.84	47.62
AT2G17560.1	Thale cress	nucleus	34.05	45.65
AT4G35570.1	Thale cress	nucleus	27.03	40.0
AT2G34450.2	Thale cress	nucleus, plastid	21.62	26.32
AT5G23420.1	Thale cress	nucleus, plastid	29.19	22.41

Protein Annotations

Gene3D:1.10.30.10	MapMan:35.1	EntrezGene:824351	ProteinID:AAC14415.1	ProteinID:AEE78855.1	ProteinID:AEE78856.1
ProteinID:AEE78857.1	EMBL:AK316819	ProteinID:ANM65542.1	ArrayExpress:AT3G51880	EnsemblPlantsGene:AT3G51880	RefSeq:AT3G51880
TAIR:AT3G51880	RefSeq:AT3G51880-TAIR-G	EnsemblPlants:AT3G51880.2	TAIR:AT3G51880.2	EMBL:AY056373	EMBL:AY113172
Unigene:At.480	ncoils:Coil	GO:GO:0000785	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003682	GO:GO:0003700	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006333	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0030527	Symbol:HMGB1
InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf	InterPro:IPR009071	InterPro:IPR036910	RefSeq:NP_001078269.1	RefSeq:NP_001327501.1
RefSeq:NP_190756.1	RefSeq:NP_974413.1	PFAM:PF00505	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037
PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025195	PO:PO:0025281	PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF292	SMART:SM00398
SUPFAM:SSF47095	UniParc:UPI000034EFE9	EMBL:Y14071	SEG:seg	:	:

Description

HMGB1high mobility group B1 [Source:TAIR;Acc:AT3G51880]

Coordinates

chr3:-:19246967..19249095

Molecular Weight (calculated)

20991.0 Da

IEP (calculated)

4.609

GRAVY (calculated)

-1.586

Length

185 amino acids

Sequence
(BLAST)

001: MKTAKGKDKV KTTKEALKPV DDRKVGKRKA PAEKPTKRET RKEKKAKKDP NKPKRAPSAF FVFLEDFRVT FKKENPNVKA VSAVGKAGGQ KWKSMSQAEK
101: APYEEKAAKR KAEYEKQMDA YNKNLEEGSD ESEKSRSEIN DEDEASGEVT IPLSNEELLE KEAAGDDEEE EEEEDDDDDD DEEED

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.