Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30359 | Canola | nucleus | 75.36 | 76.47 |
| CDY64458 | Canola | nucleus | 75.36 | 75.91 |
| CDY24349 | Canola | nucleus | 73.91 | 74.45 |
| CDY26814 | Canola | nucleus | 69.57 | 73.85 |
| Bra002073.1-P | Field mustard | nucleus | 73.19 | 64.33 |
| AT4G35570.1 | Thale cress | nucleus | 55.07 | 60.8 |
| AT1G20693.1 | Thale cress | nucleus, plastid | 55.07 | 52.78 |
| KRH39434 | Soybean | nucleus | 50.0 | 48.59 |
| TraesCS6A01G253900.1 | Wheat | nucleus | 47.83 | 47.48 |
| KRH07880 | Soybean | nucleus | 47.83 | 47.48 |
| TraesCS6D01G235400.1 | Wheat | nucleus | 47.1 | 46.76 |
| TraesCS6B01G271600.1 | Wheat | nucleus | 47.1 | 46.76 |
| OQU85655 | Sorghum | nucleus | 44.2 | 45.86 |
| Os02t0670400-01 | Rice | nucleus | 47.83 | 45.52 |
| Bra037266.1-P | Field mustard | endoplasmic reticulum, vacuole | 75.36 | 43.33 |
| AT1G20696.2 | Thale cress | nucleus, plastid | 44.2 | 41.5 |
| Os04t0564600-01 | Rice | nucleus | 33.33 | 34.85 |
| AT3G51880.2 | Thale cress | nucleus | 45.65 | 34.05 |
| HORVU2Hr1G095890.3 | Barley | nucleus, plastid | 31.16 | 33.59 |
| Zm00001d002659_P001 | Maize | nucleus | 29.71 | 33.33 |
| Zm00001d017555_P001 | Maize | nucleus | 42.03 | 33.33 |
| Zm00001d051427_P002 | Maize | nucleus | 42.75 | 32.78 |
| TraesCS2A01G404100.1 | Wheat | nucleus | 28.26 | 32.23 |
| TraesCS2D01G401100.1 | Wheat | nucleus | 28.26 | 32.23 |
| KXG26906 | Sorghum | nucleus | 27.54 | 31.93 |
| TraesCS2B01G422000.1 | Wheat | nucleus | 27.54 | 31.67 |
| HORVU6Hr1G064720.1 | Barley | nucleus, plastid | 47.1 | 28.89 |
| AT2G34450.2 | Thale cress | nucleus, plastid | 27.54 | 25.0 |
| AT5G23420.1 | Thale cress | nucleus, plastid | 34.78 | 19.92 |
| Zm00001d031233_P001 | Maize | vacuole | 26.09 | 16.07 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | EntrezGene:816263 | ProteinID:AAD32913.1 | ProteinID:AEC06651.1 | ProteinID:AEC06652.1 |
| ProteinID:AEC06653.1 | EMBL:AF370150 | EMBL:AF370562 | EMBL:AK317044 | ArrayExpress:AT2G17560 | EnsemblPlantsGene:AT2G17560 |
| RefSeq:AT2G17560 | TAIR:AT2G17560 | RefSeq:AT2G17560-TAIR-G | EnsemblPlants:AT2G17560.1 | TAIR:AT2G17560.1 | EMBL:AY086336 |
| EMBL:AY150467 | ncoils:Coil | EMBL:F20020 | GO:GO:0000785 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003682 | GO:GO:0003700 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 |
| GO:GO:0006333 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0030527 | Symbol:HMGB4 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 |
| InterPro:IPR036910 | RefSeq:NP_001031364.2 | RefSeq:NP_001077909.1 | RefSeq:NP_179347.1 | PFAM:PF00505 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF222 | UniProt:Q42344 | SMART:SM00398 |
| SUPFAM:SSF47095 | UniParc:UPI00000AC62F | EMBL:Y14074 | SEG:seg | : | : |
Description
HMGB4High mobility group B protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q42344]
Coordinates
chr2:-:7642117..7643739
Molecular Weight (calculated)
15420.7 Da
IEP (calculated)
8.833
GRAVY (calculated)
-1.317
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGGESKAEA TSTDQRLKTR GRKAGKKTKK DPNQPKRPPS AFFVFLEDFR KEFNLANPNN KSVATVGKAA GARWKAMTDE DKAPYVAKAE SRKTEYIKNV
101: QQYNLKLASG TNREEDDSDK SKSEVDEAVS EEEAEDDD
101: QQYNLKLASG TNREEDDSDK SKSEVDEAVS EEEAEDDD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.