Factsheet for Zm00001d017555_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85655	Sorghum	nucleus	66.67	87.22
Os02t0670400-01	Rice	nucleus	65.52	78.62
Zm00001d051427_P002	Maize	nucleus	81.03	78.33
TraesCS6D01G235400.1	Wheat	nucleus	56.32	70.5
TraesCS6A01G253900.1	Wheat	nucleus	55.75	69.78
TraesCS6B01G271600.1	Wheat	nucleus	55.17	69.06
Zm00001d002659_P001	Maize	nucleus	32.18	45.53
HORVU6Hr1G064720.1	Barley	nucleus, plastid	55.75	43.11
Bra011624.1-P	Field mustard	nucleus	34.48	42.55
CDX69149	Canola	nucleus	34.48	42.55
CDX75512	Canola	nucleus	34.48	42.55
KRH07880	Soybean	nucleus	33.91	42.45
AT2G17560.1	Thale cress	nucleus	33.33	42.03
KRH39434	Soybean	nucleus	33.91	41.55
CDY64458	Canola	nucleus	30.46	38.69
CDY24349	Canola	nucleus	29.89	37.96
CDY26814	Canola	nucleus	28.16	37.69
Zm00001d014858_P001	Maize	extracellular, mitochondrion	33.91	37.58
CDY30359	Canola	nucleus	28.74	36.76
Bra002073.1-P	Field mustard	nucleus	29.31	32.48
AT4G35570.1	Thale cress	nucleus	22.99	32.0
CDY40620	Canola	nucleus, plastid	35.06	29.61
CDX72548	Canola	plastid	35.06	29.61
Zm00001d021433_P002	Maize	nucleus	25.29	28.95
Zm00001d036355_P001	Maize	nucleus	14.94	28.89
Bra017723.1-P	Field mustard	nucleus, plastid	33.91	27.83
Zm00001d052749_P001	Maize	nucleus	32.76	26.89
Zm00001d006306_P006	Maize	vacuole	25.29	25.14
Zm00001d043946_P001	Maize	nucleus, plastid	18.39	23.02
Bra037266.1-P	Field mustard	endoplasmic reticulum, vacuole	29.89	21.67
Zm00001d006298_P001	Maize	cytosol	16.67	21.64
Zm00001d011528_P001	Maize	mitochondrion, plastid	12.07	18.92
Zm00001d031233_P001	Maize	vacuole	23.56	18.3

Protein Annotations

Gene3D:1.10.30.10	MapMan:35.2	EntrezGene:541951	UniProt:A0A1D6HFM2	ProteinID:AQK73436.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf	InterPro:IPR009071	InterPro:IPR036910	PFAM:PF00505
PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF308	SMART:SM00398	SUPFAM:SSF47095	UniParc:UPI0008442A1B
EnsemblPlantsGene:Zm00001d017555	EnsemblPlants:Zm00001d017555_P001	EnsemblPlants:Zm00001d017555_T001	SEG:seg	:	:

Description

high mobility group box protein2 high mobility group box protein2

Coordinates

chr5:+:199470076..199472102

Molecular Weight (calculated)

18952.9 Da

IEP (calculated)

8.301

GRAVY (calculated)

-0.965

Length

174 amino acids

Sequence
(BLAST)

001: MKGKADTSKK DEGRLRAGGA AGKRKKAAAS GKPKRPPSAF FVFMSEFRQE YQALHPGNKS VATVSHLAPC TPLSLYFFSC AFAGILLVRG CGSGEQGSRG
101: KVACYVRSSL FGWEKQPYVD QAGQKKQDYE KTKANFDKKE STSSKKAKTE DEDGSKSEVD DEDGSSDEEN DDDE

Best Arabidopsis Sequence Match ( AT1G20693.2 )
(BLAST)

001: MKGAKSKTET RSSKLSVTKK PAKGAGRGKA AAKDPNKPKR PASAFFVFME DFRETFKKEN PKNKSVATVG KAAGDKWKSL SDSEKAPYVA KAEKRKVEYE
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEED DD

Arabidopsis Description

HMGB2High mobility group B protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O49596]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.