Factsheet for TraesCS6A01G253900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G235400.1	Wheat	nucleus	99.28	99.28
TraesCS6B01G271600.1	Wheat	nucleus	98.56	98.56
Os02t0670400-01	Rice	nucleus	81.3	77.93
OQU85655	Sorghum	nucleus	72.66	75.94
HORVU6Hr1G064720.1	Barley	nucleus, plastid	90.65	56.0
Zm00001d017555_P001	Maize	nucleus	69.78	55.75
Zm00001d051427_P002	Maize	nucleus	69.06	53.33
TraesCS2A01G404100.1	Wheat	nucleus	46.04	52.89
CDX69149	Canola	nucleus	50.36	49.65
CDX75512	Canola	nucleus	49.64	48.94
Bra011624.1-P	Field mustard	nucleus	49.64	48.94
AT2G17560.1	Thale cress	nucleus	47.48	47.83
CDY26814	Canola	nucleus	43.88	46.92
KRH39434	Soybean	nucleus	47.48	46.48
KRH07880	Soybean	nucleus	46.04	46.04
CDY64458	Canola	nucleus	44.6	45.26
CDY24349	Canola	nucleus	43.88	44.53
CDY30359	Canola	nucleus	43.17	44.12
TraesCS7A01G552400.1	Wheat	nucleus	45.32	39.13
Bra002073.1-P	Field mustard	nucleus	43.17	38.22
AT4G35570.1	Thale cress	nucleus	33.81	37.6
CDX72548	Canola	plastid	49.64	33.5
CDY40620	Canola	nucleus, plastid	49.64	33.5
Bra017723.1-P	Field mustard	nucleus, plastid	46.76	30.66
TraesCS5A01G352100.2	Wheat	nucleus	35.25	28.32
TraesCS3A01G242800.1	Wheat	nucleus	25.18	27.13
Bra037266.1-P	Field mustard	endoplasmic reticulum, vacuole	43.17	25.0
TraesCS7A01G329300.1	Wheat	nucleus	34.53	22.22
Zm00001d031233_P001	Maize	vacuole	30.94	19.2

Protein Annotations

EnsemblPlants:TraesCS6A01G253900.1	EnsemblPlantsGene:TraesCS6A01G253900	Gene3D:1.10.30.10	InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf	InterPro:IPR009071
InterPro:IPR036910	ncoils:Coil	PANTHER:PTHR13711	PANTHER:PTHR13711:SF308	PFAM:PF00505	PFscan:PS50118
SEG:seg	SMART:SM00398	SUPFAM:SSF47095	TIGR:cd01390	MapMan:35.2	:

Description

No Description!

Coordinates

chr6A:+:470066098..470067289

Molecular Weight (calculated)

15389.5 Da

IEP (calculated)

7.000

GRAVY (calculated)

-1.529

Length

139 amino acids

Sequence
(BLAST)

001: MKGKADTSKK GEGRLKAAGG ASKRKKDAAA AGKPKRPPSA FFVFMSEFRQ QYNAENPNNK SVANVSKAAG EKWRAMSDED KAPYVEKAEQ KKKDYEKTKA
101: TFDNKESASS KKAKTQNDEE VKSEVEDEGS DEENEDDDE

Best Arabidopsis Sequence Match ( AT2G17560.1 )
(BLAST)

001: MKGGESKAEA TSTDQRLKTR GRKAGKKTKK DPNQPKRPPS AFFVFLEDFR KEFNLANPNN KSVATVGKAA GARWKAMTDE DKAPYVAKAE SRKTEYIKNV
101: QQYNLKLASG TNREEDDSDK SKSEVDEAVS EEEAEDDD

Arabidopsis Description

HMGB4High mobility group B protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q42344]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.