Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G359600.1 | Wheat | nucleus | 68.21 | 95.16 |
| TraesCS5B01G354800.1 | Wheat | nucleus | 67.05 | 93.55 |
| Os09t0551600-01 | Rice | nucleus | 56.65 | 77.17 |
| Zm00001d021433_P002 | Maize | nucleus | 58.38 | 66.45 |
| OQU89887 | Sorghum | nucleus | 50.29 | 58.39 |
| Solyc02g082700.2.1 | Tomato | nucleus | 45.09 | 55.71 |
| PGSC0003DMT400003983 | Potato | extracellular, nucleus | 45.09 | 55.32 |
| VIT_04s0044g00110.t01 | Wine grape | nucleus | 48.55 | 54.55 |
| GSMUA_Achr10P... | Banana | nucleus | 47.98 | 53.9 |
| GSMUA_Achr2P03630_001 | Banana | nucleus | 47.98 | 53.9 |
| Zm00001d006298_P001 | Maize | cytosol | 41.62 | 53.73 |
| Zm00001d006306_P006 | Maize | vacuole | 54.34 | 53.71 |
| CDY29512 | Canola | nucleus, plastid | 42.2 | 53.28 |
| Bra025838.1-P | Field mustard | nucleus, plastid | 42.2 | 53.28 |
| GSMUA_Achr9P21200_001 | Banana | nucleus | 47.4 | 53.25 |
| VIT_18s0122g01190.t01 | Wine grape | nucleus | 46.82 | 52.94 |
| GSMUA_Achr11P... | Banana | nucleus | 45.66 | 51.97 |
| CDY01357 | Canola | nucleus, plastid | 42.2 | 51.77 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.2 | 51.77 |
| CDX96626 | Canola | nucleus, plastid | 42.77 | 51.03 |
| CDY33643 | Canola | nucleus, plastid | 42.2 | 50.34 |
| AT1G20693.1 | Thale cress | nucleus, plastid | 41.62 | 50.0 |
| CDY65900 | Canola | nucleus, plastid | 41.62 | 50.0 |
| Solyc03g032130.2.1 | Tomato | nucleus | 31.79 | 48.67 |
| KRH51597 | Soybean | nucleus | 43.93 | 48.41 |
| HORVU5Hr1G087340.1 | Barley | mitochondrion | 66.47 | 47.52 |
| TraesCS7A01G552400.1 | Wheat | nucleus | 43.35 | 46.58 |
| Bra012244.1-P | Field mustard | nucleus, plastid | 25.43 | 44.44 |
| CDY31871 | Canola | plastid | 41.04 | 43.56 |
| AT1G20696.2 | Thale cress | nucleus, plastid | 36.99 | 43.54 |
| KRH60915 | Soybean | nucleus | 44.51 | 42.54 |
| PGSC0003DMT400048091 | Potato | nucleus | 38.73 | 41.88 |
| TraesCS6A01G253900.1 | Wheat | nucleus | 28.32 | 35.25 |
| TraesCS2A01G404100.1 | Wheat | nucleus | 23.7 | 33.88 |
| TraesCS3A01G242800.1 | Wheat | nucleus | 20.81 | 27.91 |
| PGSC0003DMT400043013 | Potato | nucleus | 31.79 | 23.61 |
| TraesCS7A01G329300.1 | Wheat | nucleus | 26.01 | 20.83 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G352100.2 | EnsemblPlantsGene:TraesCS5A01G352100 | Gene3D:1.10.30.10 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 |
| InterPro:IPR036910 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF284 | PFAM:PF00505 | PFscan:PS50118 | SEG:seg |
| SMART:SM00398 | SUPFAM:SSF47095 | TIGR:cd01390 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr5A:+:554285943..554287476
Molecular Weight (calculated)
19039.4 Da
IEP (calculated)
10.199
GRAVY (calculated)
-1.010
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MKAKAGSRAG DSRLAVKKSK AEKDPNKPKR PPSAFFVFMD TFRKEYKEKH PDVKQVSVIG KAGGEKWKSL SDAEKAPYAA KAEKLKAEYA KKIDAYNNPQ
101: VIPSPTSPSS KHRRQNCLTQ HMVVLNRVVS CSSPFQAGEA SGDSDKSKSE VNDEDDGSEV RPSTPTPDRS LRC
101: VIPSPTSPSS KHRRQNCLTQ HMVVLNRVVS CSSPFQAGEA SGDSDKSKSE VNDEDDGSEV RPSTPTPDRS LRC
001: MKGAKSKAET RSTKLSVTKK PAKGAKGAAK DPNKPKRPSS AFFVFMEDFR VTYKEEHPKN KSVAAVGKAG GEKWKSLSDS EKAPYVAKAD KRKVEYEKNM
101: KAYNKKLVIA LRKMRNLTSQ FQRLTMRMML RMAVKRRKTM IKKLKLW
101: KAYNKKLVIA LRKMRNLTSQ FQRLTMRMML RMAVKRRKTM IKKLKLW
Arabidopsis Description
HMGB3high mobility group B3 [Source:TAIR;Acc:AT1G20696]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.