Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G242800.1 | Wheat | nucleus | 98.45 | 98.45 |
| HORVU3Hr1G060620.1 | Barley | nucleus | 97.67 | 96.18 |
| Os01t0666200-01 | Rice | nucleus | 75.19 | 72.93 |
| Zm00001d043946_P001 | Maize | nucleus, plastid | 62.79 | 58.27 |
| GSMUA_Achr4P15000_001 | Banana | nucleus | 51.94 | 58.26 |
| TraesCS3B01G270900.1 | Wheat | nucleus | 96.12 | 51.67 |
| GSMUA_Achr4P07950_001 | Banana | nucleus | 50.39 | 50.0 |
| Zm00001d011528_P001 | Maize | mitochondrion, plastid | 42.64 | 49.55 |
| OQU87294 | Sorghum | plastid | 70.54 | 48.15 |
| KRH42324 | Soybean | plastid | 53.49 | 46.62 |
| KRH58452 | Soybean | nucleus, plastid | 51.94 | 44.67 |
| Bra021911.1-P | Field mustard | nucleus | 45.74 | 39.07 |
| AT2G34450.2 | Thale cress | nucleus, plastid | 43.41 | 36.84 |
| KRH58451 | Soybean | extracellular | 34.11 | 31.21 |
| TraesCS6A01G253900.1 | Wheat | nucleus | 27.13 | 25.18 |
| TraesCS2A01G404100.1 | Wheat | nucleus | 23.26 | 24.79 |
| TraesCS7A01G552400.1 | Wheat | nucleus | 28.68 | 22.98 |
| TraesCS5A01G352100.2 | Wheat | nucleus | 27.91 | 20.81 |
| TraesCS7A01G329300.1 | Wheat | nucleus | 31.78 | 18.98 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G242800.1 | EnsemblPlantsGene:TraesCS3A01G242800 | Gene3D:1.10.30.10 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 |
| InterPro:IPR036910 | ncoils:Coil | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF200 | PFAM:PF00505 | PFscan:PS50118 |
| SEG:seg | SMART:SM00398 | SUPFAM:SSF47095 | TIGR:cd01390 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr3A:+:456443225..456446980
Molecular Weight (calculated)
15121.1 Da
IEP (calculated)
10.475
GRAVY (calculated)
-1.290
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTRSQTTPK PLNTVRLPPV ESPRTRSRPK PKPETRKKGT LGDLRRPKKP PTAFFYFMED FRKTFQEENP SVKAMQDVGK ACGEKWNKMA FEEKVKYYDL
101: ATERRAEFEK AMAQYNKKKI NGELSEESE
101: ATERRAEFEK AMAQYNKKKI NGELSEESE
001: MTKRAPKSGP LSPSCSGGSS RNLELAVKSS EGARRSTRLR LQPLRKPKTS PKKKPVKLQT KMPKKPATAF FFFLDDFRKQ YQEENPDVKS MREIGKTCGE
101: KWKTMTYEEK VKYYDIATEK REEFHRAMTE YTKRMESGAH DESETDSDYS E
101: KWKTMTYEEK VKYYDIATEK REEFHRAMTE YTKRMESGAH DESETDSDYS E
Arabidopsis Description
HMG-box (high mobility group) DNA-binding family protein [Source:TAIR;Acc:AT2G34450]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.