CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043946_P001	Maize	nucleus, plastid	56.61	76.98
Os01t0666200-01	Rice	nucleus	50.26	71.43
Zm00001d011528_P001	Maize	mitochondrion, plastid	41.8	71.17
TraesCS3A01G242800.1	Wheat	nucleus	48.15	70.54
TraesCS3D01G242800.1	Wheat	nucleus	47.62	69.77
HORVU3Hr1G060620.1	Barley	nucleus	48.15	69.47
GSMUA_Achr4P15000_001	Banana	nucleus	38.62	63.48
GSMUA_Achr4P07950_001	Banana	nucleus	38.1	55.38
KRH42324	Soybean	plastid	37.04	47.3
TraesCS3B01G270900.1	Wheat	nucleus	59.26	46.67
KRH58452	Soybean	nucleus, plastid	36.51	46.0
Bra021911.1-P	Field mustard	nucleus	34.92	43.71
AT2G34450.2	Thale cress	nucleus, plastid	34.92	43.42
KRH58451	Soybean	extracellular	22.75	30.5
OQU85655	Sorghum	nucleus	19.58	27.82
OQU89887	Sorghum	nucleus	21.16	26.85
KXG26906	Sorghum	nucleus	14.29	22.69
EES14345	Sorghum	nucleus	20.63	17.65
KXG20955	Sorghum	cytosol, extracellular, nucleus	19.58	13.31

Protein Annotations

Gene3D:1.10.30.10	MapMan:35.1	UniProt:A0A1W0VYU7	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf	InterPro:IPR009071	InterPro:IPR036910	EnsemblPlants:OQU87294	ProteinID:OQU87294
ProteinID:OQU87294.1	PFAM:PF00505	PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF200	SMART:SM00398
EnsemblPlantsGene:SORBI_3003G249100	SUPFAM:SSF47095	UniParc:UPI0009DC8280	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:58772185..58774823

Molecular Weight (calculated)

21474.0 Da

IEP (calculated)

10.660

GRAVY (calculated)

-1.012

Length

189 amino acids

Sequence
(BLAST)

001: RRRAELRGHL VFPLPVSASP PAPISSLSSG CRSPRSCLLA SCLPQTSRKP PNSTRIDERG LPCRMKTRSQ TAPKPLKTVA MAPRPSSPKR KSRPKPAGKG
101: DRRAPKKPPT AFFYFMEDFR KVYKQEKPSV KSMQEIGKAC GEKWNTMAFE EKVKYYDIAT EKRAEFEKAM IEYNKKKKNG EMSEESDYD

Best Arabidopsis Sequence Match ( AT2G34450.4 )
(BLAST)

001: MTKRAPKSGP LSPSCSGGSS RNLELAVKSS EGARRSTRLR LQPLRKPKTS PKKKPVKLQT KMPKKPATAF FFFLDDFRKQ YQEENPDVKS MREIGKTCGE
101: KWKTMTYEEK VKYYDIATEK REEFHRAMTE YTKRMESGAH DESETDSDYS E

Arabidopsis Description

HMG-box (high mobility group) DNA-binding family protein [Source:TAIR;Acc:AT2G34450]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.