Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0551600-01 | Rice | nucleus | 61.74 | 72.44 |
| TraesCS5D01G359600.1 | Wheat | nucleus | 58.39 | 70.16 |
| TraesCS5B01G354800.1 | Wheat | nucleus | 57.72 | 69.35 |
| Zm00001d006306_P006 | Maize | vacuole | 68.46 | 58.29 |
| Zm00001d006298_P001 | Maize | cytosol | 52.35 | 58.21 |
| Solyc02g082700.2.1 | Tomato | nucleus | 47.65 | 50.71 |
| PGSC0003DMT400003983 | Potato | extracellular, nucleus | 47.65 | 50.35 |
| TraesCS5A01G352100.2 | Wheat | nucleus | 58.39 | 50.29 |
| VIT_04s0044g00110.t01 | Wine grape | nucleus | 51.68 | 50.0 |
| GSMUA_Achr10P... | Banana | nucleus | 51.68 | 50.0 |
| GSMUA_Achr11P... | Banana | nucleus | 51.01 | 50.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.98 | 49.65 |
| GSMUA_Achr2P03630_001 | Banana | nucleus | 51.01 | 49.35 |
| GSMUA_Achr9P21200_001 | Banana | nucleus | 51.01 | 49.35 |
| VIT_18s0122g01190.t01 | Wine grape | nucleus | 49.66 | 48.37 |
| CDY29512 | Canola | nucleus, plastid | 42.28 | 45.99 |
| Bra025838.1-P | Field mustard | nucleus, plastid | 42.28 | 45.99 |
| KRH51597 | Soybean | nucleus | 47.65 | 45.22 |
| AT1G20696.2 | Thale cress | nucleus, plastid | 44.3 | 44.9 |
| CDX96626 | Canola | nucleus, plastid | 43.62 | 44.83 |
| CDY01357 | Canola | nucleus, plastid | 41.61 | 43.97 |
| AT1G20693.1 | Thale cress | nucleus, plastid | 42.28 | 43.75 |
| CDY65900 | Canola | nucleus, plastid | 42.28 | 43.75 |
| CDY33643 | Canola | nucleus, plastid | 42.28 | 43.45 |
| Solyc03g032130.2.1 | Tomato | nucleus | 30.87 | 40.71 |
| PGSC0003DMT400048091 | Potato | nucleus | 43.62 | 40.62 |
| CDY31871 | Canola | plastid | 43.62 | 39.88 |
| KRH60915 | Soybean | nucleus | 48.32 | 39.78 |
| HORVU5Hr1G087340.1 | Barley | mitochondrion | 55.03 | 33.88 |
| OQU85655 | Sorghum | nucleus | 28.86 | 32.33 |
| Bra012244.1-P | Field mustard | nucleus, plastid | 21.48 | 32.32 |
| KXG26906 | Sorghum | nucleus | 22.15 | 27.73 |
| KXG20955 | Sorghum | cytosol, extracellular, nucleus | 44.3 | 23.74 |
| PGSC0003DMT400043013 | Potato | nucleus | 35.57 | 22.75 |
| OQU87294 | Sorghum | plastid | 26.85 | 21.16 |
| EES14345 | Sorghum | nucleus | 24.16 | 16.29 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | UniProt:A0A1W0W668 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 | InterPro:IPR036910 | EnsemblPlants:OQU89887 | ProteinID:OQU89887 |
| ProteinID:OQU89887.1 | PFAM:PF00505 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF222 | SMART:SM00398 |
| EnsemblPlantsGene:SORBI_3002G289800 | SUPFAM:SSF47095 | UniParc:UPI0001C80E0E | : | : | : |
Description
hypothetical protein
Coordinates
chr2:+:66833318..66839842
Molecular Weight (calculated)
16797.3 Da
IEP (calculated)
10.306
GRAVY (calculated)
-0.740
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MKARAKSSGG DSRLSVKKGK AQKDPNKPKR PPSAFFVFME EFRKDYKEKH PNVKQVSVIG KACGDKWKSL SDAEKAPYVS KAEKLKVEYT KKMDAYNNKQ
101: VHHVPLHSHC SAVPRNSSVY DALYESCVIC RCSLEAPQRL VILTSPSLR
101: VHHVPLHSHC SAVPRNSSVY DALYESCVIC RCSLEAPQRL VILTSPSLR
001: MKGAKSKAET RSTKLSVTKK PAKGAKGAAK DPNKPKRPSS AFFVFMEDFR VTYKEEHPKN KSVAAVGKAG GEKWKSLSDS EKAPYVAKAD KRKVEYEKNM
101: KAYNKKLVIA LRKMRNLTSQ FQRLTMRMML RMAVKRRKTM IKKLKLW
101: KAYNKKLVIA LRKMRNLTSQ FQRLTMRMML RMAVKRRKTM IKKLKLW
Arabidopsis Description
HMGB3high mobility group B3 [Source:TAIR;Acc:AT1G20696]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.