Factsheet for Solyc03g032130.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g082700.2.1	Tomato	nucleus	61.95	50.0
CDY65900	Canola	nucleus, plastid	61.95	48.61
CDX96626	Canola	nucleus, plastid	61.95	48.28
CDY33643	Canola	nucleus, plastid	61.06	47.59
CDY01357	Canola	nucleus, plastid	58.41	46.81
Bra025838.1-P	Field mustard	nucleus, plastid	56.64	46.72
CDY29512	Canola	nucleus, plastid	56.64	46.72
AT1G20693.1	Thale cress	nucleus, plastid	58.41	45.83
VIT_18s0122g01190.t01	Wine grape	nucleus	59.29	43.79
PGSC0003DMT400048091	Potato	nucleus	61.95	43.75
TraesCS5D01G359600.1	Wheat	nucleus	47.79	43.55
Os09t0551600-01	Rice	nucleus	48.67	43.31
VIT_04s0044g00110.t01	Wine grape	nucleus	58.41	42.86
TraesCS5B01G354800.1	Wheat	nucleus	46.9	42.74
GSMUA_Achr2P03630_001	Banana	nucleus	56.64	41.56
GSMUA_Achr10P...	Banana	nucleus	55.75	40.91
Os06t0728000-02	Rice	nucleus	56.64	40.76
Zm00001d006298_P001	Maize	cytosol	47.79	40.3
Zm00001d014858_P001	Maize	extracellular, mitochondrion	54.87	39.49
GSMUA_Achr9P21200_001	Banana	nucleus	52.21	38.31
GSMUA_Achr11P...	Banana	nucleus	51.33	38.16
CDY31871	Canola	plastid	53.1	36.81
Bra012244.1-P	Field mustard	nucleus, plastid	31.86	36.36
Zm00001d021433_P002	Maize	nucleus	48.67	36.18
GSMUA_AchrUn_...	Banana	nucleus	45.13	36.17
TraesCS7D01G538400.2	Wheat	nucleus	51.33	36.02
TraesCS7A01G552400.1	Wheat	nucleus	51.33	36.02
TraesCSU01G099700.3	Wheat	nucleus	51.33	36.02
KRH51597	Soybean	nucleus	49.56	35.67
AT1G20696.2	Thale cress	nucleus, plastid	44.25	34.01
KRH60915	Soybean	nucleus	53.98	33.7
TraesCS5A01G352100.2	Wheat	nucleus	48.67	31.79
OQU89887	Sorghum	nucleus	40.71	30.87
Zm00001d006306_P006	Maize	vacuole	46.9	30.29
HORVU7Hr1G121390.1	Barley	nucleus, plastid	48.67	24.66
Zm00001d036355_P001	Maize	nucleus	19.47	24.44
KXG20955	Sorghum	cytosol, extracellular, nucleus	53.98	21.94
HORVU5Hr1G087340.1	Barley	mitochondrion	46.9	21.9
Solyc04g008820.2.1	Tomato	nucleus	31.86	16.74

Protein Annotations

Gene3D:1.10.30.10	MapMan:35.2	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:HMG_box_dom
InterPro:HMG_box_dom_sf	InterPro:IPR009071	InterPro:IPR036910	UniProt:K4BFI4	PFAM:PF00505	PFscan:PS50118
PANTHER:PTHR13711	PANTHER:PTHR13711:SF284	SMART:SM00398	SUPFAM:SSF47095	EnsemblPlantsGene:Solyc03g032130.2	EnsemblPlants:Solyc03g032130.2.1
UniParc:UPI00027677FB	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:-:4635148..4637511

Molecular Weight (calculated)

12773.4 Da

IEP (calculated)

4.466

GRAVY (calculated)

-1.476

Length

113 amino acids

Sequence
(BLAST)

001: MLPRIQTSLR GQQVLSSFSS SEDFRKQYKE KHPGNKSVAA VGKAGGDKWK HLTDAEKAPY IAKAEKRKAD YEKLMDAYNR KQAGEAEEDE ESDKSKSEVD
101: EEDGSDEEEE DDD

Best Arabidopsis Sequence Match ( AT1G20696.3 )
(BLAST)

1: MICREDFRVT YKEEHPKNKS VAAVGKAGGE KWKSLSDSEK APYVAKADKR KVEYEKNMKA YNKKLEEGPK EDEESDKSVS EVNDEDDAED GSEEVRRR

Arabidopsis Description

HMGB3high mobility group B3 [Source:TAIR;Acc:AT1G20696]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.