Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0551600-01 | Rice | nucleus | 73.03 | 87.4 |
| TraesCS5D01G359600.1 | Wheat | nucleus | 66.45 | 81.45 |
| TraesCS5B01G354800.1 | Wheat | nucleus | 66.45 | 81.45 |
| Zm00001d006298_P001 | Maize | cytosol | 59.21 | 67.16 |
| Zm00001d006306_P006 | Maize | vacuole | 75.0 | 65.14 |
| GSMUA_Achr10P... | Banana | nucleus | 59.87 | 59.09 |
| Solyc02g082700.2.1 | Tomato | nucleus | 53.95 | 58.57 |
| GSMUA_Achr2P03630_001 | Banana | nucleus | 59.21 | 58.44 |
| TraesCS5A01G352100.2 | Wheat | nucleus | 66.45 | 58.38 |
| PGSC0003DMT400003983 | Potato | extracellular, nucleus | 53.95 | 58.16 |
| GSMUA_Achr11P... | Banana | nucleus | 57.24 | 57.24 |
| GSMUA_Achr9P21200_001 | Banana | nucleus | 57.89 | 57.14 |
| GSMUA_AchrUn_... | Banana | nucleus | 51.97 | 56.03 |
| VIT_04s0044g00110.t01 | Wine grape | nucleus | 55.92 | 55.19 |
| VIT_18s0122g01190.t01 | Wine grape | nucleus | 53.95 | 53.59 |
| CDY29512 | Canola | nucleus, plastid | 46.05 | 51.09 |
| Bra025838.1-P | Field mustard | nucleus, plastid | 46.05 | 51.09 |
| AT1G20693.1 | Thale cress | nucleus, plastid | 48.03 | 50.69 |
| CDX96626 | Canola | nucleus, plastid | 48.03 | 50.34 |
| Zm00001d014858_P001 | Maize | extracellular, mitochondrion | 51.32 | 49.68 |
| CDY01357 | Canola | nucleus, plastid | 46.05 | 49.65 |
| CDY65900 | Canola | nucleus, plastid | 46.71 | 49.31 |
| CDY33643 | Canola | nucleus, plastid | 46.71 | 48.97 |
| Solyc03g032130.2.1 | Tomato | nucleus | 36.18 | 48.67 |
| KRH51597 | Soybean | nucleus | 50.0 | 48.41 |
| Zm00001d036355_P001 | Maize | nucleus | 26.32 | 44.44 |
| AT1G20696.2 | Thale cress | nucleus, plastid | 42.76 | 44.22 |
| PGSC0003DMT400048091 | Potato | nucleus | 45.39 | 43.12 |
| KRH60915 | Soybean | nucleus | 50.66 | 42.54 |
| CDY31871 | Canola | plastid | 45.39 | 42.33 |
| Bra012244.1-P | Field mustard | nucleus, plastid | 26.97 | 41.41 |
| HORVU5Hr1G087340.1 | Barley | mitochondrion | 64.47 | 40.5 |
| Zm00001d002659_P001 | Maize | nucleus | 25.66 | 31.71 |
| Zm00001d043946_P001 | Maize | nucleus, plastid | 27.63 | 30.22 |
| Zm00001d017555_P001 | Maize | nucleus | 28.95 | 25.29 |
| Zm00001d011528_P001 | Maize | mitochondrion, plastid | 18.42 | 25.23 |
| Zm00001d051427_P002 | Maize | nucleus | 28.95 | 24.44 |
| PGSC0003DMT400043013 | Potato | nucleus | 36.18 | 23.61 |
| Zm00001d052749_P001 | Maize | nucleus | 27.63 | 19.81 |
| Zm00001d031233_P001 | Maize | vacuole | 21.71 | 14.73 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | EntrezGene:542658 | UniProt:A0A1D6IAX2 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 | InterPro:IPR036910 | ProteinID:ONM57119.1 |
| PFAM:PF00505 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF284 | SMART:SM00398 | SUPFAM:SSF47095 |
| UniParc:UPI00084294B3 | EnsemblPlantsGene:Zm00001d021433 | EnsemblPlants:Zm00001d021433_P002 | EnsemblPlants:Zm00001d021433_T002 | : | : |
Description
HMG-transcription factor 13High mobility group B protein 2
Coordinates
chr7:-:152095387..152097351
Molecular Weight (calculated)
16997.9 Da
IEP (calculated)
9.903
GRAVY (calculated)
-1.068
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSRARSTAG DSRLSVRKTK AEKDPNKPKR PPSAFFVFME EFRKDYKEKH PNVKQVSVIG KAGGDKWKSL SDAVSLFVPQ SHFNRLSPQL VAVATLQMQE
101: KAPYVSKAEK LKAEYTKKID AYNNKQSGDP TASGDSDKSK SEVNDEDEEG DE
101: KAPYVSKAEK LKAEYTKKID AYNNKQSGDP TASGDSDKSK SEVNDEDEEG DE
001: MKGAKSKTET RSSKLSVTKK PAKGAGRGKA AAKDPNKPKR PASAFFVFME DFRETFKKEN PKNKSVATVG KAAGDKWKSL SDSEKAPYVA KAEKRKVEYE
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEED DD
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEED DD
Arabidopsis Description
HMGB2High mobility group B protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O49596]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.