Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 1
- mitochondrion 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY33643 | Canola | nucleus, plastid | 88.19 | 87.59 |
| CDX96626 | Canola | nucleus, plastid | 86.81 | 86.21 |
| CDY65900 | Canola | nucleus, plastid | 81.25 | 81.25 |
| CDY29512 | Canola | nucleus, plastid | 77.08 | 81.02 |
| Bra025838.1-P | Field mustard | nucleus, plastid | 77.08 | 81.02 |
| CDY01357 | Canola | nucleus, plastid | 78.47 | 80.14 |
| Bra012244.1-P | Field mustard | nucleus, plastid | 52.78 | 76.77 |
| PGSC0003DMT400003983 | Potato | extracellular, nucleus | 64.58 | 65.96 |
| Solyc02g082700.2.1 | Tomato | nucleus | 63.89 | 65.71 |
| CDY31871 | Canola | plastid | 74.31 | 65.64 |
| VIT_18s0122g01190.t01 | Wine grape | nucleus | 69.44 | 65.36 |
| KRH51597 | Soybean | nucleus | 68.75 | 63.06 |
| Zm00001d014858_P001 | Maize | extracellular, mitochondrion | 67.36 | 61.78 |
| VIT_04s0044g00110.t01 | Wine grape | nucleus | 65.97 | 61.69 |
| GSMUA_Achr2P03630_001 | Banana | nucleus | 65.28 | 61.04 |
| Os06t0728000-02 | Rice | nucleus | 65.28 | 59.87 |
| GSMUA_Achr11P... | Banana | nucleus | 63.19 | 59.87 |
| GSMUA_Achr9P21200_001 | Banana | nucleus | 63.89 | 59.74 |
| AT1G20696.2 | Thale cress | nucleus, plastid | 60.42 | 59.18 |
| GSMUA_Achr10P... | Banana | nucleus | 63.19 | 59.09 |
| Solyc03g032130.2.1 | Tomato | nucleus | 45.83 | 58.41 |
| TraesCS5D01G359600.1 | Wheat | nucleus | 50.0 | 58.06 |
| KRH60915 | Soybean | nucleus | 72.22 | 57.46 |
| TraesCS5B01G354800.1 | Wheat | nucleus | 49.31 | 57.26 |
| TraesCS7A01G552400.1 | Wheat | nucleus | 63.89 | 57.14 |
| TraesCS7D01G538400.2 | Wheat | nucleus | 63.89 | 57.14 |
| TraesCSU01G099700.3 | Wheat | nucleus | 63.89 | 57.14 |
| AT2G17560.1 | Thale cress | nucleus | 52.78 | 55.07 |
| GSMUA_AchrUn_... | Banana | nucleus | 53.47 | 54.61 |
| Os09t0551600-01 | Rice | nucleus | 47.92 | 54.33 |
| PGSC0003DMT400048091 | Potato | nucleus | 54.17 | 48.75 |
| Zm00001d021433_P002 | Maize | nucleus | 50.69 | 48.03 |
| Zm00001d036355_P001 | Maize | nucleus | 29.86 | 47.78 |
| AT3G51880.2 | Thale cress | nucleus | 59.03 | 45.95 |
| AT4G35570.1 | Thale cress | nucleus | 36.81 | 42.4 |
| OQU89887 | Sorghum | nucleus | 43.75 | 42.28 |
| TraesCS5A01G352100.2 | Wheat | nucleus | 50.0 | 41.62 |
| Zm00001d006306_P006 | Maize | vacuole | 48.61 | 40.0 |
| HORVU7Hr1G121390.1 | Barley | nucleus, plastid | 61.11 | 39.46 |
| Zm00001d006298_P001 | Maize | cytosol | 36.11 | 38.81 |
| KXG20955 | Sorghum | cytosol, extracellular, nucleus | 57.64 | 29.86 |
| HORVU5Hr1G087340.1 | Barley | mitochondrion | 49.31 | 29.34 |
| AT2G34450.2 | Thale cress | nucleus, plastid | 29.86 | 28.29 |
| PGSC0003DMT400043013 | Potato | nucleus | 42.36 | 26.18 |
| AT5G23420.1 | Thale cress | nucleus, plastid | 37.5 | 22.41 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | EntrezGene:838658 | ProteinID:AAF80615.1 | EMBL:AB493468 | ProteinID:AEE30006.1 |
| ProteinID:AEE30007.1 | ProteinID:AEE30008.1 | EMBL:AF370248 | EMBL:AK118543 | ArrayExpress:AT1G20693 | EnsemblPlantsGene:AT1G20693 |
| RefSeq:AT1G20693 | TAIR:AT1G20693 | RefSeq:AT1G20693-TAIR-G | EnsemblPlants:AT1G20693.1 | TAIR:AT1G20693.1 | EMBL:AY063064 |
| EMBL:AY084731 | Unigene:At.21298 | ncoils:Coil | GO:GO:0000785 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003682 | GO:GO:0003700 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 |
| GO:GO:0006333 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0030527 | Symbol:HMGB2 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 |
| InterPro:IPR036910 | RefSeq:NP_001031074.1 | RefSeq:NP_001077569.1 | RefSeq:NP_564123.1 | UniProt:O49596 | PFAM:PF00505 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PRINTS:PR00886 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF222 | SMART:SM00398 |
| SUPFAM:SSF47095 | UniParc:UPI000005EC17 | EMBL:Y14072 | SEG:seg | : | : |
Description
HMGB2High mobility group B protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O49596]
Coordinates
chr1:+:7176747..7178895
Molecular Weight (calculated)
15982.3 Da
IEP (calculated)
7.000
GRAVY (calculated)
-1.425
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGAKSKTET RSSKLSVTKK PAKGAGRGKA AAKDPNKPKR PASAFFVFME DFRETFKKEN PKNKSVATVG KAAGDKWKSL SDSEKAPYVA KAEKRKVEYE
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEEE EDDD
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEEE EDDD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.