Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69149 | Canola | nucleus | 68.0 | 60.28 |
| Bra011624.1-P | Field mustard | nucleus | 67.2 | 59.57 |
| CDX75512 | Canola | nucleus | 67.2 | 59.57 |
| AT2G17560.1 | Thale cress | nucleus | 60.8 | 55.07 |
| CDX72548 | Canola | plastid | 65.6 | 39.81 |
| CDY40620 | Canola | nucleus, plastid | 64.8 | 39.32 |
| KRH07880 | Soybean | nucleus | 42.4 | 38.13 |
| KRH39434 | Soybean | nucleus | 43.2 | 38.03 |
| Bra017723.1-P | Field mustard | nucleus, plastid | 64.0 | 37.74 |
| AT1G20693.1 | Thale cress | nucleus, plastid | 42.4 | 36.81 |
| TraesCS6D01G235400.1 | Wheat | nucleus | 38.4 | 34.53 |
| OQU85655 | Sorghum | nucleus | 36.0 | 33.83 |
| TraesCS6A01G253900.1 | Wheat | nucleus | 37.6 | 33.81 |
| Os02t0670400-01 | Rice | nucleus | 39.2 | 33.79 |
| AT1G20696.2 | Thale cress | nucleus, plastid | 39.2 | 33.33 |
| TraesCS6B01G271600.1 | Wheat | nucleus | 36.8 | 33.09 |
| KXG26906 | Sorghum | nucleus | 26.4 | 27.73 |
| Zm00001d002659_P001 | Maize | nucleus | 27.2 | 27.64 |
| AT3G51880.2 | Thale cress | nucleus | 40.0 | 27.03 |
| TraesCS2B01G422000.1 | Wheat | nucleus | 25.6 | 26.67 |
| TraesCS2A01G404100.1 | Wheat | nucleus | 25.6 | 26.45 |
| TraesCS2D01G401100.1 | Wheat | nucleus | 25.6 | 26.45 |
| AT2G34450.2 | Thale cress | nucleus, plastid | 32.0 | 26.32 |
| HORVU2Hr1G095890.3 | Barley | nucleus, plastid | 25.6 | 25.0 |
| Zm00001d051427_P002 | Maize | nucleus | 34.4 | 23.89 |
| Os04t0564600-01 | Rice | nucleus | 24.8 | 23.48 |
| Zm00001d017555_P001 | Maize | nucleus | 32.0 | 22.99 |
| HORVU6Hr1G064720.1 | Barley | nucleus, plastid | 37.6 | 20.89 |
| AT5G23420.1 | Thale cress | nucleus, plastid | 28.8 | 14.94 |
| Zm00001d031233_P001 | Maize | vacuole | 22.4 | 12.5 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | EntrezGene:829709 | UniProt:A0A178V4H6 | ProteinID:AEE86532.1 | EMBL:AK317173 |
| ProteinID:ANM68018.1 | ArrayExpress:AT4G35570 | EnsemblPlantsGene:AT4G35570 | RefSeq:AT4G35570 | TAIR:AT4G35570 | RefSeq:AT4G35570-TAIR-G |
| EnsemblPlants:AT4G35570.1 | TAIR:AT4G35570.1 | EMBL:AY085615 | EMBL:BT025597 | ProteinID:CAA20027.1 | ProteinID:CAB80273.1 |
| GO:GO:0000785 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003682 | GO:GO:0003700 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006333 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030527 | Symbol:HMGB5 | InterPro:HMG_box_dom |
| InterPro:HMG_box_dom_sf | InterPro:IPR009071 | InterPro:IPR036910 | RefSeq:NP_001329802.1 | RefSeq:NP_195282.1 | UniProt:O49597 |
| ProteinID:OAP01119.1 | PFAM:PF00505 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF222 |
| SMART:SM00398 | SUPFAM:SSF47095 | UniParc:UPI00000ACF57 | EMBL:Y14075 | : | : |
Description
HMGB5High mobility group B protein 5 [Source:UniProtKB/Swiss-Prot;Acc:O49597]
Coordinates
chr4:-:16887131..16888371
Molecular Weight (calculated)
14203.6 Da
IEP (calculated)
10.078
GRAVY (calculated)
-1.366
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDNQTEVES RSTDDRLKVR GNKVGKKTKD PNRPKKPPSP FFVFLDDFRK EFNLANPDNK SVGNVGRAAG KKWKTMTEEE RAPFVAKSQS KKTEYAVTMQ
101: QYNMELANGN KTTGDDEKQE KAADD
101: QYNMELANGN KTTGDDEKQE KAADD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.