Factsheet for Bra017723.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40620	Canola	nucleus, plastid	93.4	96.12
CDX72548	Canola	plastid	91.04	93.69
Bra011624.1-P	Field mustard	nucleus	59.43	89.36
AT4G35570.1	Thale cress	nucleus	37.74	64.0
Bra002073.1-P	Field mustard	nucleus	44.81	60.51
Bra025838.1-P	Field mustard	nucleus, plastid	33.02	51.09
KRH39434	Soybean	nucleus	32.08	47.89
Os02t0670400-01	Rice	nucleus	32.55	47.59
KRH07880	Soybean	nucleus	31.13	47.48
TraesCS6A01G253900.1	Wheat	nucleus	30.66	46.76
OQU85655	Sorghum	nucleus	29.25	46.62
TraesCS6D01G235400.1	Wheat	nucleus	30.19	46.04
TraesCS6B01G271600.1	Wheat	nucleus	30.19	46.04
Bra012244.1-P	Field mustard	nucleus, plastid	19.81	42.42
Bra037266.1-P	Field mustard	endoplasmic reticulum, vacuole	47.64	42.08
HORVU2Hr1G095890.3	Barley	nucleus, plastid	23.11	38.28
KXG26906	Sorghum	nucleus	20.75	36.97
TraesCS2D01G401100.1	Wheat	nucleus	20.75	36.36
Os04t0564600-01	Rice	nucleus	22.17	35.61
TraesCS2A01G404100.1	Wheat	nucleus	20.28	35.54
Bra012832.1-P	Field mustard	nucleus	26.42	35.22
Zm00001d051427_P002	Maize	nucleus	29.72	35.0
Zm00001d002659_P001	Maize	nucleus	20.28	34.96
TraesCS2B01G422000.1	Wheat	nucleus	19.34	34.17
Zm00001d017555_P001	Maize	nucleus	27.83	33.91
HORVU6Hr1G064720.1	Barley	nucleus, plastid	33.49	31.56
Bra021911.1-P	Field mustard	nucleus	19.81	27.81
Bra009681.1-P	Field mustard	nucleus	16.04	21.38
Bra026498.1-P	Field mustard	nucleus	24.06	20.73
Bra029371.1-P	Field mustard	nucleus	23.58	20.58
Zm00001d031233_P001	Maize	vacuole	16.98	16.07

Protein Annotations

Gene3D:1.10.30.10	MapMan:35.1	EnsemblPlantsGene:Bra017723	EnsemblPlants:Bra017723.1	EnsemblPlants:Bra017723.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf	InterPro:IPR009071	InterPro:IPR036910	UniProt:M4DMI8
PFAM:PF00505	PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF222	SMART:SM00398	SUPFAM:SSF47095
UniParc:UPI0002540B62	SEG:seg	:	:	:	:

Description

AT2G17560 (E=1e-025) HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY GROUP B 4); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor

Coordinates

chrA03:-:30000450..30002285

Molecular Weight (calculated)

23047.1 Da

IEP (calculated)

9.889

GRAVY (calculated)

-0.743

Length

212 amino acids

Sequence
(BLAST)

001: MSLFTSFFGC FVPKSGSRIS SDDGSTSNSK VMSLEKAKRK ADDTWRAPII VTYFPVGSNL SRLSGEMKGG EAKAQAKSTD ERLKTRGKKA GKKVKDPNKP
101: KRPPSAFFVF LEGFRKEFNL ANPDNKSVGA VGKAAGAKWK SMTVEDKAPY VAKAETKKTE YAKTMQKYNM KLANGTSTAG DDDSDKSKSE VNDEEDAASD
201: EVSACTILNC CY

Best Arabidopsis Sequence Match ( AT2G17560.1 )
(BLAST)

001: MKGGESKAEA TSTDQRLKTR GRKAGKKTKK DPNQPKRPPS AFFVFLEDFR KEFNLANPNN KSVATVGKAA GARWKAMTDE DKAPYVAKAE SRKTEYIKNV
101: QQYNLKLASG TNREEDDSDK SKSEVDEAVS EEEAEDDD

Arabidopsis Description

HMGB4High mobility group B protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q42344]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.