Factsheet for Bra012832.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90629	Canola	nucleus	81.13	75.0
AT3G51880.2	Thale cress	nucleus	80.5	69.19
KRH75875	Soybean	nucleus	60.38	56.8
KRH65770	Soybean	nucleus	59.12	56.63
VIT_08s0007g02200.t01	Wine grape	nucleus	57.86	54.76
Bra025838.1-P	Field mustard	nucleus, plastid	44.65	51.82
PGSC0003DMT400021917	Potato	nucleus	55.35	50.29
Bra012244.1-P	Field mustard	nucleus, plastid	27.04	43.43
Bra011624.1-P	Field mustard	nucleus	35.22	39.72
Bra002073.1-P	Field mustard	nucleus	33.96	34.39
Bra017723.1-P	Field mustard	nucleus, plastid	35.22	26.42
Bra037266.1-P	Field mustard	endoplasmic reticulum, vacuole	33.33	22.08
Bra021911.1-P	Field mustard	nucleus	20.13	21.19
Bra026498.1-P	Field mustard	nucleus	28.3	18.29
Bra009681.1-P	Field mustard	nucleus	18.24	18.24
Bra029371.1-P	Field mustard	nucleus	27.67	18.11

Protein Annotations

Gene3D:1.10.30.10	MapMan:35.1	EnsemblPlantsGene:Bra012832	EnsemblPlants:Bra012832.1	EnsemblPlants:Bra012832.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf	InterPro:IPR009071	InterPro:IPR036910
UniProt:M4D8M2	PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF292	SMART:SM00398	SUPFAM:SSF47095
UniParc:UPI0002540754	SEG:seg	:	:	:	:

Description

AT3G51880 (E=4e-021) HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP B 1); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor

Coordinates

chrA03:-:22021330..22022340

Molecular Weight (calculated)

18104.4 Da

IEP (calculated)

9.821

GRAVY (calculated)

-1.063

Length

159 amino acids

Sequence
(BLAST)

001: MKTAKGKDKA KNTKEALKPV DDRKVGKRKA PAEKGETRKE KKAKKDPNKP KRASSAFFVF LEDFRITFKK DNPNVKAVSA EKAPYEEKAA KRKAEYEKLM
101: DAYNKNLEEG SDESEKSRSE VNDEDEASEE VTIPINNAEF CTLPIVFCLL SYRFLKSFA

Best Arabidopsis Sequence Match ( AT3G51880.2 )
(BLAST)

001: MKTAKGKDKV KTTKEALKPV DDRKVGKRKA PAEKPTKRET RKEKKAKKDP NKPKRAPSAF FVFLEDFRVT FKKENPNVKA VSAVGKAGGQ KWKSMSQAEK
101: APYEEKAAKR KAEYEKQMDA YNKNLEEGSD ESEKSRSEIN DEDEASGEVT IPLSNEELLE KEAAGDDEEE EEEEDDDDDD DEEED

Arabidopsis Description

HMGB1high mobility group B1 [Source:TAIR;Acc:AT3G51880]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.