Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0007g02200.t01 | Wine grape | nucleus | 69.71 | 72.62 |
| KRH65770 | Soybean | nucleus | 66.86 | 70.48 |
| KRH75875 | Soybean | nucleus | 65.14 | 67.46 |
| CDX78045 | Canola | nucleus | 61.14 | 60.8 |
| CDY29051 | Canola | nucleus | 60.0 | 60.0 |
| CDX90629 | Canola | nucleus | 58.86 | 59.88 |
| AT3G51880.2 | Thale cress | nucleus | 61.71 | 58.38 |
| PGSC0003DMT400003983 | Potato | extracellular, nucleus | 46.86 | 58.16 |
| Bra012832.1-P | Field mustard | nucleus | 50.29 | 55.35 |
| PGSC0003DMT400048091 | Potato | nucleus | 42.86 | 46.88 |
| PGSC0003DMT400043013 | Potato | nucleus | 35.43 | 26.61 |
| PGSC0003DMT400065103 | Potato | nucleus | 33.14 | 23.87 |
Protein Annotations
| Gene3D:1.10.30.10 | EntrezGene:102581733 | MapMan:35.2 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 | InterPro:IPR036910 | UniProt:M1AFW1 | PFAM:PF00505 |
| EnsemblPlantsGene:PGSC0003DMG400008501 | PGSC:PGSC0003DMG400008501 | EnsemblPlants:PGSC0003DMT400021917 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF292 |
| SMART:SM00398 | SUPFAM:SSF47095 | UniParc:UPI0002952A92 | RefSeq:XP_006366341.1 | RefSeq:XP_006366342.1 | SEG:seg |
Description
HMG-protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008501]
Coordinates
chr9:-:87180..90572
Molecular Weight (calculated)
19842.8 Da
IEP (calculated)
5.377
GRAVY (calculated)
-1.724
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGGKGKGAL RKETRSALKP VEDRKMGKRK ATLKDDKKKV TKDKKAKKDP NKPKRPPSAF FVFLEEFRKT FKKENPNVKA VSAVGKAGGE KWKSLSAAEK
101: APYEAKAAKR KAEYGKLMNA YNNKQTESSD DEDEEEKEEE KEKKSKPEVH DEDAEDSGQG EEEEEDDEDE EDEDD
101: APYEAKAAKR KAEYGKLMNA YNNKQTESSD DEDEEEKEEE KEKKSKPEVH DEDAEDSGQG EEEEEDDEDE EDEDD
001: MKTAKGKDKV KTTKEALKPV DDRKVGKRKA PAEKPTKRET RKEKKAKKDP NKPKRAPSAF FVFLEDFRVT FKKENPNVKA VSAVGKAGGQ KWKSMSQAEK
101: APYEEKAAKR KAEYEKQMDA YNKNLEEGSD ESEKSRSEIN DEDEASGEVT IPLSNEELLE KEAAGDDEEE EEEEDDDDDD DEEED
101: APYEEKAAKR KAEYEKQMDA YNKNLEEGSD ESEKSRSEIN DEDEASGEVT IPLSNEELLE KEAAGDDEEE EEEEDDDDDD DEEED
Arabidopsis Description
HMGB1high mobility group B1 [Source:TAIR;Acc:AT3G51880]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.