Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400003983 | Potato | extracellular, nucleus | 57.5 | 65.25 |
| Solyc03g032130.2.1 | Tomato | nucleus | 43.75 | 61.95 |
| Bra025838.1-P | Field mustard | nucleus, plastid | 48.12 | 56.2 |
| CDY29512 | Canola | nucleus, plastid | 48.12 | 56.2 |
| CDX96626 | Canola | nucleus, plastid | 50.62 | 55.86 |
| CDY01357 | Canola | nucleus, plastid | 48.75 | 55.32 |
| CDY33643 | Canola | nucleus, plastid | 50.0 | 55.17 |
| TraesCS5D01G359600.1 | Wheat | nucleus | 42.5 | 54.84 |
| VIT_04s0044g00110.t01 | Wine grape | nucleus | 52.5 | 54.55 |
| VIT_18s0122g01190.t01 | Wine grape | nucleus | 51.88 | 54.25 |
| CDY65900 | Canola | nucleus, plastid | 48.75 | 54.17 |
| AT1G20693.1 | Thale cress | nucleus, plastid | 48.75 | 54.17 |
| TraesCS5B01G354800.1 | Wheat | nucleus | 41.88 | 54.03 |
| AT1G20696.2 | Thale cress | nucleus, plastid | 48.12 | 52.38 |
| GSMUA_Achr2P03630_001 | Banana | nucleus | 50.0 | 51.95 |
| GSMUA_Achr9P21200_001 | Banana | nucleus | 49.38 | 51.3 |
| Os09t0551600-01 | Rice | nucleus | 40.62 | 51.18 |
| GSMUA_Achr10P... | Banana | nucleus | 48.75 | 50.65 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.38 | 50.35 |
| KRH51597 | Soybean | nucleus | 49.38 | 50.32 |
| GSMUA_Achr11P... | Banana | nucleus | 46.88 | 49.34 |
| CDY31871 | Canola | plastid | 48.75 | 47.85 |
| Bra012244.1-P | Field mustard | nucleus, plastid | 29.38 | 47.47 |
| Os06t0728000-02 | Rice | nucleus | 46.25 | 47.13 |
| Zm00001d014858_P001 | Maize | extracellular, mitochondrion | 45.62 | 46.5 |
| Zm00001d036355_P001 | Maize | nucleus | 25.62 | 45.56 |
| Zm00001d021433_P002 | Maize | nucleus | 43.12 | 45.39 |
| KRH60915 | Soybean | nucleus | 49.38 | 43.65 |
| OQU89887 | Sorghum | nucleus | 40.62 | 43.62 |
| PGSC0003DMT400021917 | Potato | nucleus | 46.88 | 42.86 |
| TraesCS7A01G552400.1 | Wheat | nucleus | 42.5 | 42.24 |
| TraesCS7D01G538400.2 | Wheat | nucleus | 42.5 | 42.24 |
| TraesCSU01G099700.3 | Wheat | nucleus | 42.5 | 42.24 |
| Zm00001d006306_P006 | Maize | vacuole | 42.5 | 38.86 |
| TraesCS5A01G352100.2 | Wheat | nucleus | 41.88 | 38.73 |
| Zm00001d006298_P001 | Maize | cytosol | 31.25 | 37.31 |
| HORVU7Hr1G121390.1 | Barley | nucleus, plastid | 42.5 | 30.49 |
| PGSC0003DMT400043013 | Potato | nucleus | 38.75 | 26.61 |
| HORVU5Hr1G087340.1 | Barley | mitochondrion | 40.0 | 26.45 |
| KXG20955 | Sorghum | cytosol, extracellular, nucleus | 40.62 | 23.38 |
| PGSC0003DMT400065103 | Potato | nucleus | 30.0 | 19.75 |
Protein Annotations
| Gene3D:1.10.30.10 | EntrezGene:102604023 | MapMan:35.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 | InterPro:IPR036910 | UniProt:M1BLY4 | PFAM:PF00505 |
| EnsemblPlantsGene:PGSC0003DMG400018685 | PGSC:PGSC0003DMG400018685 | EnsemblPlants:PGSC0003DMT400048091 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF222 |
| SMART:SM00398 | SUPFAM:SSF47095 | UniParc:UPI000296D406 | RefSeq:XP_006343329.1 | SEG:seg | : |
Description
High mobility group protein 2 HMG2 [Source:PGSC_GENE;Acc:PGSC0003DMG400018685]
Coordinates
chr3:-:3133768..3139031
Molecular Weight (calculated)
18440.7 Da
IEP (calculated)
10.929
GRAVY (calculated)
-1.039
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAHPFFIMK GGKSKGKADN KLGVKKSAAQ TKKEKNAAKD PNKPKRPASA FFVFMEDFRK QYKEKHPGNK SVAAVGKAGG DKWKHLTDAE KAPYIAKAEK
101: RKAEYEKLMD AYNRKQARSN CELLVRLRKM RNLTSQSLRL MRKMEAMRKK RMMTEVLMEE
101: RKAEYEKLMD AYNRKQARSN CELLVRLRKM RNLTSQSLRL MRKMEAMRKK RMMTEVLMEE
001: MKGAKSKAET RSTKLSVTKK PAKGAKGAAK DPNKPKRPSS AFFVFMEDFR VTYKEEHPKN KSVAAVGKAG GEKWKSLSDS EKAPYVAKAD KRKVEYEKNM
101: KAYNKKLVIA LRKMRNLTSQ FQRLTMRMML RMAVKRRKTM IKKLKLW
101: KAYNKKLVIA LRKMRNLTSQ FQRLTMRMML RMAVKRRKTM IKKLKLW
Arabidopsis Description
HMGB3high mobility group B3 [Source:TAIR;Acc:AT1G20696]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.