Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0044g00110.t01 | Wine grape | nucleus | 31.76 | 48.05 |
| PGSC0003DMT400003983 | Potato | extracellular, nucleus | 28.33 | 46.81 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.9 | 46.1 |
| VIT_18s0122g01190.t01 | Wine grape | nucleus | 30.04 | 45.75 |
| TraesCS5B01G354800.1 | Wheat | nucleus | 24.03 | 45.16 |
| TraesCS5D01G359600.1 | Wheat | nucleus | 23.61 | 44.35 |
| GSMUA_Achr2P03630_001 | Banana | nucleus | 29.18 | 44.16 |
| GSMUA_Achr9P21200_001 | Banana | nucleus | 28.76 | 43.51 |
| CDY29512 | Canola | nucleus, plastid | 25.32 | 43.07 |
| Bra025838.1-P | Field mustard | nucleus, plastid | 25.32 | 43.07 |
| GSMUA_Achr10P... | Banana | nucleus | 28.33 | 42.86 |
| CDY33643 | Canola | nucleus, plastid | 26.61 | 42.76 |
| CDX96626 | Canola | nucleus, plastid | 26.61 | 42.76 |
| KRH51597 | Soybean | nucleus | 28.76 | 42.68 |
| AT1G20693.1 | Thale cress | nucleus, plastid | 26.18 | 42.36 |
| CDY65900 | Canola | nucleus, plastid | 25.75 | 41.67 |
| GSMUA_Achr11P... | Banana | nucleus | 27.04 | 41.45 |
| CDY01357 | Canola | nucleus, plastid | 24.89 | 41.13 |
| Os09t0551600-01 | Rice | nucleus | 22.32 | 40.94 |
| AT1G20696.2 | Thale cress | nucleus, plastid | 24.89 | 39.46 |
| Os06t0728000-02 | Rice | nucleus | 26.18 | 38.85 |
| Zm00001d014858_P001 | Maize | extracellular, mitochondrion | 26.18 | 38.85 |
| PGSC0003DMT400048091 | Potato | nucleus | 26.61 | 38.75 |
| KRH60915 | Soybean | nucleus | 28.76 | 37.02 |
| Zm00001d036355_P001 | Maize | nucleus | 14.16 | 36.67 |
| TraesCS7A01G552400.1 | Wheat | nucleus | 25.32 | 36.65 |
| CDY31871 | Canola | plastid | 25.32 | 36.2 |
| Zm00001d021433_P002 | Maize | nucleus | 23.61 | 36.18 |
| TraesCS7D01G538400.2 | Wheat | nucleus | 24.89 | 36.02 |
| TraesCSU01G099700.3 | Wheat | nucleus | 24.89 | 36.02 |
| OQU89887 | Sorghum | nucleus | 22.75 | 35.57 |
| PGSC0003DMT400021917 | Potato | nucleus | 26.61 | 35.43 |
| TraesCS5A01G352100.2 | Wheat | nucleus | 23.61 | 31.79 |
| Zm00001d006298_P001 | Maize | cytosol | 18.03 | 31.34 |
| Bra012244.1-P | Field mustard | nucleus, plastid | 13.3 | 31.31 |
| Zm00001d006306_P006 | Maize | vacuole | 23.18 | 30.86 |
| HORVU7Hr1G121390.1 | Barley | nucleus, plastid | 24.46 | 25.56 |
| HORVU5Hr1G087340.1 | Barley | mitochondrion | 24.03 | 23.14 |
| PGSC0003DMT400065103 | Potato | nucleus | 24.03 | 23.05 |
| KXG20955 | Sorghum | cytosol, extracellular, nucleus | 23.18 | 19.42 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:HMG_box_dom |
| InterPro:HMG_box_dom_sf | InterPro:IPR009071 | InterPro:IPR036910 | UniProt:M1BDX1 | PFAM:PF00505 | EnsemblPlantsGene:PGSC0003DMG400016682 |
| PGSC:PGSC0003DMG400016682 | EnsemblPlants:PGSC0003DMT400043013 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF222 | SMART:SM00398 |
| SUPFAM:SSF47095 | UniParc:UPI00029636B2 | : | : | : | : |
Description
High mobility group protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016682]
Coordinates
chr3:-:5437764..5438982
Molecular Weight (calculated)
26642.7 Da
IEP (calculated)
10.039
GRAVY (calculated)
-0.868
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGVKSCLSF IFSTIKSFDA VEKLVRDKWK QMSDAEKAPY IAETEKRRVE YAKVLNSYNQ LMAAGYAEAE KRRVEYAKVL NSYNQLMAAG YAEAEKPDKS
101: RSEVDPSSDS KEGDKSNAKA NYVFHMKKKT PGLKKLRRPA RGLDIPKRPT SAYFIFMEEF RKQFRELNPS IKSIAVVGKA GGSKWKQMSD AEKAPYIAEE
201: EKRKLEYAKR MNAYNRRVAV VDAEQEESDE SRS
101: RSEVDPSSDS KEGDKSNAKA NYVFHMKKKT PGLKKLRRPA RGLDIPKRPT SAYFIFMEEF RKQFRELNPS IKSIAVVGKA GGSKWKQMSD AEKAPYIAEE
201: EKRKLEYAKR MNAYNRRVAV VDAEQEESDE SRS
001: MKGAKSKTET RSSKLSVTKK PAKGAGRGKA AAKDPNKPKR PASAFFVFME DFRETFKKEN PKNKSVATVG KAAGDKWKSL SDSEKAPYVA KAEKRKVEYE
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEED DD
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEED DD
Arabidopsis Description
HMGB2High mobility group B protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O49596]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.