Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29512 | Canola | nucleus, plastid | 100.0 | 100.0 |
| Bra012244.1-P | Field mustard | nucleus, plastid | 56.2 | 77.78 |
| AT1G20693.1 | Thale cress | nucleus, plastid | 81.02 | 77.08 |
| PGSC0003DMT400003983 | Potato | extracellular, nucleus | 65.69 | 63.83 |
| Solyc02g082700.2.1 | Tomato | nucleus | 64.96 | 63.57 |
| KRH51597 | Soybean | nucleus | 70.8 | 61.78 |
| VIT_18s0122g01190.t01 | Wine grape | nucleus | 68.61 | 61.44 |
| VIT_04s0044g00110.t01 | Wine grape | nucleus | 66.42 | 59.09 |
| TraesCS5D01G359600.1 | Wheat | nucleus | 53.28 | 58.87 |
| AT1G20696.2 | Thale cress | nucleus, plastid | 62.77 | 58.5 |
| TraesCS5B01G354800.1 | Wheat | nucleus | 51.82 | 57.26 |
| Solyc03g032130.2.1 | Tomato | nucleus | 46.72 | 56.64 |
| GSMUA_Achr2P03630_001 | Banana | nucleus | 62.04 | 55.19 |
| GSMUA_Achr11P... | Banana | nucleus | 59.85 | 53.95 |
| KRH60915 | Soybean | nucleus | 70.8 | 53.59 |
| Zm00001d014858_P001 | Maize | extracellular, mitochondrion | 61.31 | 53.5 |
| Os06t0728000-02 | Rice | nucleus | 61.31 | 53.5 |
| GSMUA_Achr10P... | Banana | nucleus | 59.85 | 53.25 |
| GSMUA_Achr9P21200_001 | Banana | nucleus | 59.85 | 53.25 |
| Os09t0551600-01 | Rice | nucleus | 48.18 | 51.97 |
| TraesCS7A01G552400.1 | Wheat | nucleus | 60.58 | 51.55 |
| TraesCS7D01G538400.2 | Wheat | nucleus | 60.58 | 51.55 |
| TraesCSU01G099700.3 | Wheat | nucleus | 60.58 | 51.55 |
| GSMUA_AchrUn_... | Banana | nucleus | 51.09 | 49.65 |
| Bra011624.1-P | Field mustard | nucleus | 51.09 | 49.65 |
| PGSC0003DMT400048091 | Potato | nucleus | 56.2 | 48.12 |
| Zm00001d021433_P002 | Maize | nucleus | 51.09 | 46.05 |
| Bra012832.1-P | Field mustard | nucleus | 51.82 | 44.65 |
| Zm00001d036355_P001 | Maize | nucleus | 28.47 | 43.33 |
| OQU89887 | Sorghum | nucleus | 45.99 | 42.28 |
| TraesCS5A01G352100.2 | Wheat | nucleus | 53.28 | 42.2 |
| Bra002073.1-P | Field mustard | nucleus | 48.18 | 42.04 |
| Zm00001d006306_P006 | Maize | vacuole | 51.09 | 40.0 |
| Zm00001d006298_P001 | Maize | cytosol | 38.69 | 39.55 |
| HORVU7Hr1G121390.1 | Barley | nucleus, plastid | 60.58 | 37.22 |
| Bra017723.1-P | Field mustard | nucleus, plastid | 51.09 | 33.02 |
| HORVU5Hr1G087340.1 | Barley | mitochondrion | 52.55 | 29.75 |
| KXG20955 | Sorghum | cytosol, extracellular, nucleus | 58.39 | 28.78 |
| Bra021911.1-P | Field mustard | nucleus | 29.93 | 27.15 |
| Bra037266.1-P | Field mustard | endoplasmic reticulum, vacuole | 45.99 | 26.25 |
| PGSC0003DMT400043013 | Potato | nucleus | 43.07 | 25.32 |
| Bra009681.1-P | Field mustard | nucleus | 26.28 | 22.64 |
| Bra029371.1-P | Field mustard | nucleus | 38.69 | 21.81 |
| Bra026498.1-P | Field mustard | nucleus | 38.69 | 21.54 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | EnsemblPlantsGene:Bra025838 | EnsemblPlants:Bra025838.1 | EnsemblPlants:Bra025838.1-P | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 | InterPro:IPR036910 |
| UniProt:M4EAM9 | PFAM:PF00505 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF222 | SMART:SM00398 |
| SUPFAM:SSF47095 | UniParc:UPI000253EFD1 | SEG:seg | : | : | : |
Description
AT1G20696 (E=9e-045) HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor
Coordinates
chrA06:+:8347726..8348661
Molecular Weight (calculated)
15158.4 Da
IEP (calculated)
9.242
GRAVY (calculated)
-1.374
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGGKSKADT KSSKLAVNKK PSKAAAKDPN KPKRPSSAFF VFMEDFRQTY KKDHPTNKSV AAVGKAGGHK WKSLSDTEKA PYVAKADNRK VEYEKNMKAY
101: NKKLEEGPKE DEEESDKSVS EVNDEDDADD GSDEVPS
101: NKKLEEGPKE DEEESDKSVS EVNDEDDADD GSDEVPS
001: MKGAKSKAET RSTKLSVTKK PAKGAKGAAK DPNKPKRPSS AFFVFMEDFR VTYKEEHPKN KSVAAVGKAG GEKWKSLSDS EKAPYVAKAD KRKVEYEKNM
101: KAYNKKLEEG PKEDEESDKS VSEVNDEDDA EDGSEEEEDD D
101: KAYNKKLEEG PKEDEESDKS VSEVNDEDDA EDGSEEEEDD D
Arabidopsis Description
HMGB3high mobility group B3 [Source:TAIR;Acc:AT1G20696]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.