Factsheet for Bra026498.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16851	Canola	nucleus	95.94	98.33
CDY64875	Canola	nucleus	93.9	96.25
Bra029371.1-P	Field mustard	nucleus	82.93	83.95
AT5G23420.1	Thale cress	nucleus, plastid	76.02	77.59
KRH75844	Soybean	cytosol	28.05	60.53
Solyc04g008820.2.1	Tomato	nucleus	52.44	60.0
KRH36171	Soybean	nucleus	47.97	59.0
GSMUA_AchrUn_...	Banana	nucleus	47.15	58.29
KRG90584	Soybean	cytosol, nucleus, plastid	48.37	56.94
PGSC0003DMT400065103	Potato	nucleus	51.63	52.26
VIT_10s0071g00870.t01	Wine grape	nucleus	50.0	51.46
Os08t0101100-01	Rice	nucleus	38.62	46.8
Zm00001d052749_P001	Maize	nucleus	39.43	45.75
TraesCS7B01G230000.1	Wheat	nucleus	39.02	44.65
TraesCS7A01G329300.1	Wheat	nucleus	38.62	43.98
TraesCS7D01G326200.1	Wheat	nucleus	38.62	43.98
EES14345	Sorghum	nucleus	39.43	43.89
Bra009681.1-P	Field mustard	nucleus	26.02	40.25
Bra011624.1-P	Field mustard	nucleus	22.76	39.72
Bra025838.1-P	Field mustard	nucleus, plastid	21.54	38.69
Bra012244.1-P	Field mustard	nucleus, plastid	15.45	38.38
Bra002073.1-P	Field mustard	nucleus	23.58	36.94
Bra021911.1-P	Field mustard	nucleus	19.51	31.79
HORVU7Hr1G078760.8	Barley	nucleus, plastid	33.74	28.62
Bra012832.1-P	Field mustard	nucleus	18.29	28.3
Bra037266.1-P	Field mustard	endoplasmic reticulum, vacuole	23.58	24.17
Bra017723.1-P	Field mustard	nucleus, plastid	20.73	24.06

Protein Annotations

Gene3D:1.10.30.10	MapMan:35.1	EnsemblPlantsGene:Bra026498	EnsemblPlants:Bra026498.1	EnsemblPlants:Bra026498.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf	InterPro:IPR009071	InterPro:IPR036910
UniProt:M4ECI8	PFAM:PF00505	PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF147	SMART:SM00398
SUPFAM:SSF47095	UniParc:UPI0002546DDD	SEG:seg	:	:	:

Description

AT5G23420 (E=7e-061) HMGB6 | HMGB6; transcription factor

Coordinates

chrA01:-:8984499..8986006

Molecular Weight (calculated)

27295.3 Da

IEP (calculated)

4.880

GRAVY (calculated)

-1.274

Length

246 amino acids

Sequence
(BLAST)

001: MAGGGGGGSS KSNAAKQRKR VEAETKDEST AKNNSNTLLR AKDGSAFARC EGCSKNVAVA LISMHSCSLD AKIRVNLEAQ VVEMQAEAKK KPVERKKSTS
101: DEPKAKRVRK AKDDKNKKGS STTSNKPKRP LTAFFIFMND FRKTFKEENP SSNVKDVAKQ GGEKWKSLTE EEKKVYLDKA AELKAEYNKS LESNDADEEE
201: EDEEKQSDDD AEEKKADDAN EAEENEVVNK EPDGKEEAED EILDDY

Best Arabidopsis Sequence Match ( AT5G23420.1 )
(BLAST)

001: MAGPSTTSNA PKQRKRVEAE TSSNTSTTLR RAKDGSAFAL CEGCNKSVAV ALISMHNCSL DAKIRVNLEA QVVETQAEAK KKPAEKKKTT SDGPKPKRLK
101: KTNDEKKSSS TSNKPKRPLT AFFIFMSDFR KTFKSEHNGS LAKDAAKIGG EKWKSLTEEE KKVYLDKAAE LKAEYNKSLE SNDADEEEED EEKQSDDVDD
201: AEEKQVDDDD EVEEKEVENT DDDKKEAEGK EEEEEEILDD Y

Arabidopsis Description

HMGB7High mobility group B protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDF9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.